Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6g06
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0612 - 5044639-5044858,5045010-5045167,5045440-5045684,504...    29   2.9  
09_02_0025 + 3088084-3088319,3089582-3089627,3089720-3090475           29   5.1  
05_07_0294 - 29038259-29038420,29038526-29038632,29038889-290390...    29   5.1  
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365...    28   6.7  

>12_01_0612 -
           5044639-5044858,5045010-5045167,5045440-5045684,
           5046006-5046294,5047540-5048561,5049320-5049389
          Length = 667

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 9/140 (6%)
 Frame = +1

Query: 145 RTYADQILLSNKQDTTQSSVLNIDSNESTRMKQAKTDLHMKEIDEYIHV-TNCTKTAIAN 321
           ++Y + ++   KQ +  +  LN   NE       KT+ H KE++E + V T   + AI +
Sbjct: 470 KSYNEMVVTQLKQMSEDNQQLNYVKNE-----MVKTERHSKEVEEALGVETQKLQGAIED 524

Query: 322 --------PDFDVQDVGAEKFNLSFDGNQIFEVKNEVKAKENSLGNILGHLNSGEIIANP 477
                    +   + V   +FN  F   QI  ++ + + KEN    +L      E +A  
Sbjct: 525 NIILKRKTKEMLSECVEQMEFNAKFYHEQIERLRKDTEEKENEFERLL-----QEELARA 579

Query: 478 VAAFDVVTQTNDLGGLRNEK 537
           +   DV ++T +   LR E+
Sbjct: 580 IEC-DVDSETTENCKLREEQ 598


>09_02_0025 + 3088084-3088319,3089582-3089627,3089720-3090475
          Length = 345

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +1

Query: 118 NPLKKSKIFRTYADQILLSNKQDTTQSSVLNIDSNES-TRMKQAKTDLHMKEIDEYIHVT 294
           N LKK   +  Y +Q+  SNK+    + V+ +D  E   R   AK     +   E   V 
Sbjct: 197 NELKKQPKWHAYLEQLDKSNKRKADYNDVIPLDDEEDIPRPIGAKASKAQRSCKEKSKVQ 256

Query: 295 NCT 303
            CT
Sbjct: 257 VCT 259


>05_07_0294 -
           29038259-29038420,29038526-29038632,29038889-29039093,
           29039173-29039536,29039588-29039772,29039879-29040080,
           29040697-29041589
          Length = 705

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 12/108 (11%)
 Frame = +1

Query: 154 ADQILLSNKQDTTQSSVLNIDSNESTRMKQAKTDLHMKEIDEYIHVTNC---------TK 306
           ++ +L  NK +   S++ ++   +   +    T L     D Y+HV            T 
Sbjct: 371 SEALLRLNKLEEADSTITSLSKLDIASLSSMSTKLSGMVADSYVHVVEAQVNMAFGSKTS 430

Query: 307 TAIANPDFDVQDVGAEKFNLSFDGN-QIFEVKNEVK--AKENSLGNIL 441
           T + +  FD+    AEK  +   GN ++  + N ++  A+    GN L
Sbjct: 431 TEVYSCRFDIAVTMAEKARVIDPGNTEVGRITNNIRLVAQARGQGNEL 478


>07_03_0111 +
           13535912-13535972,13536081-13536142,13536418-13536510,
           13537577-13537649,13537876-13538265,13538337-13538404,
           13539334-13539375,13540211-13540735,13540817-13540974,
           13541078-13541636,13542438-13542500,13542579-13542680,
           13542779-13543096,13543175-13543267,13543489-13543590,
           13543678-13543782,13544190-13544323,13545097-13545280,
           13545701-13545832,13546215-13546327,13546468-13546558,
           13547138-13549339
          Length = 1889

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
 Frame = +1

Query: 130 KSKIFRTYADQILLSNKQDTTQSSVLN--IDSNESTRMKQAKTDLHMKEIDEYIHVTNCT 303
           +S+ F+  A Q+       +   S+L   +  +  TR+K ++T LH K   E I +    
Sbjct: 630 ESQKFKPSAVQLPQGESNASENESLLKDLLSDSAFTRLKDSETGLHQKSPPELIEMALKY 689

Query: 304 KTAIANPDFDVQDVGAEKFNLSFDGNQIFEVKNEVKAKENSLGNIL 441
              +A P   V D G+ + +   DG  + +  +    +  SLG ++
Sbjct: 690 YDEVALPKL-VADFGSLELS-PVDGRTLTDFMHTRGLQMRSLGQVV 733


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,815,042
Number of Sequences: 37544
Number of extensions: 289986
Number of successful extensions: 727
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)