Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6g06
         (734 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL445483-5|CAI17055.1|  580|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ...    32   2.5  
AB102801-1|BAD89392.1|  203|Homo sapiens IL6ST nirs variant 3 pr...    32   2.5  

>AL445483-5|CAI17055.1|  580|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 59 protein.
          Length = 580

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 271 IDEYIHVTNCTKTAIANPDFDVQDVGAEKFNLSFDGNQIFEVKNEVKAK 417
           +DEY+H  N  K+   NP    QDV   +  L + G   +E  N++K K
Sbjct: 526 MDEYVHQENTYKSTWRNPQHFQQDV---RMTLGYVGKAQWEEDNQLKVK 571


>AB102801-1|BAD89392.1|  203|Homo sapiens IL6ST nirs variant 3
           protein.
          Length = 203

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
 Frame = +1

Query: 4   HYGFWAVAVLL--LSENASGHRVKRTNAENFNALINLYKINPLKKSKIFRTYADQILLSN 177
           H  F AV VL   L  N   H +   N+E  ++++ L   NP  KS I   Y   I    
Sbjct: 41  HSNFTAVCVLKEKLKPNPP-HNLSVINSEELSSILKLTWTNPSIKSVIILKY--NIQYRT 97

Query: 178 KQDTTQSSVLNIDSNESTRMKQAKTDLHMKEIDEYIHVTNCTK 306
           K  +T S +   D+  STR      DL  K   EY+    C K
Sbjct: 98  KDASTWSQIPPEDT-ASTRSSFTVQDL--KPFTEYVFRIRCMK 137


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,818,722
Number of Sequences: 237096
Number of extensions: 1610479
Number of successful extensions: 7605
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7605
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)