Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6g06
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68319-4|CAA92702.1|  884|Caenorhabditis elegans Hypothetical pr...    32   0.48 
AC024847-9|AAR30201.1|  147|Caenorhabditis elegans C.elegans hom...    30   2.0  
AF040647-6|AAR30205.3|  436|Caenorhabditis elegans Hypothetical ...    29   2.6  
U50191-10|AAK31550.2| 1146|Caenorhabditis elegans Hypothetical p...    29   3.4  
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ...    29   3.4  
AF016437-3|AAB65885.2|  405|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z22176-13|CAO82058.1| 1185|Caenorhabditis elegans Hypothetical p...    29   4.5  
Z22176-10|CAD45611.1| 1157|Caenorhabditis elegans Hypothetical p...    29   4.5  
AF424978-1|AAL23934.1| 1157|Caenorhabditis elegans UNC-16 protein.     29   4.5  
U41107-11|AAC71161.1|  454|Caenorhabditis elegans Hypothetical p...    28   7.9  
U41107-9|AAK73877.1|  471|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U41107-8|AAN39670.1|  468|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AL132848-2|CAB60385.2|  333|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z68319-4|CAA92702.1|  884|Caenorhabditis elegans Hypothetical
           protein T23G7.4 protein.
          Length = 884

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
 Frame = +1

Query: 67  KRTNAENFNALINLYKINPLKKSKIFRTYADQILLSNKQDTTQSSVLNIDSNESTRMKQA 246
           K  NA++F AL N+ K+    KSK    +AD +   +  D T++++  I   +      +
Sbjct: 230 KGENADHFAALKNISKLIKDSKSKAENVFADVLKRKDDADATRNALGVIVRFKFIFFLSS 289

Query: 247 KTDLHMKEIDEYIHVTN-CTKTAIANPDFDV 336
           K +  MK+  EYI + N  T+      D DV
Sbjct: 290 KIEDSMKK-GEYITILNDYTRAKSLYADTDV 319


>AC024847-9|AAR30201.1|  147|Caenorhabditis elegans C.elegans
           homeobox protein 9 protein.
          Length = 147

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 268 EIDEYIHVTNCTKTAIANPDFDVQDVGAEKFNLSFDGNQIFEVKNEVKAKE 420
           EIDE+    +    A  +P    Q    +K   +F G Q+FE++ + +AK+
Sbjct: 43  EIDEFGRCKSSLDQAKESPIEKCQKTKRKKARTTFSGKQVFELEKQFEAKK 93


>AF040647-6|AAR30205.3|  436|Caenorhabditis elegans Hypothetical
           protein F54D12.7 protein.
          Length = 436

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -1

Query: 281 YSSISFICKSVFACFILVLSFESIF-KTLLCVVSCLF 174
           YS +SF+ + +F+CF+   S E+ F KT   V+S LF
Sbjct: 374 YSILSFVFQKIFSCFL--SSLETCFLKTTKPVISTLF 408


>U50191-10|AAK31550.2| 1146|Caenorhabditis elegans Hypothetical
            protein T14B4.1 protein.
          Length = 1146

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 2/135 (1%)
 Frame = +1

Query: 181  QDTTQSSVLNIDSNESTRMKQAKTDLHMKEIDEYIHVTNCTKTAIANPDFDVQDVGAEKF 360
            ++T  ++++   +N + ++K    D         ++ +  +K A   P  + +DVG E+ 
Sbjct: 901  EETIPNNIIMEMNNITHQIKSMNEDQEFLSAPSEVY-SALSKNASCAPSMENEDVGEEES 959

Query: 361  NLSFDGNQIFEVKNEVKAKENSLGNIL--GHLNSGEIIANPVAAFDVVTQTNDLGGLRNE 534
             + FD     E      A  +    I+    LN G I    VA+  +V + N+LGG+   
Sbjct: 960  PIEFD-----EQPENTNASTSFQRKIVKENELNDGGISLIVVAS--LVDKPNNLGGICRT 1012

Query: 535  KDSFKYEDINAKDDL 579
             + F  + +   D L
Sbjct: 1013 SEIFGVDTLVVADVL 1027


>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
           protein Y80D3A.8 protein.
          Length = 1293

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +1

Query: 448 LNSGEIIANPVAAFDVVTQTNDLGGLRNEKDSFKYEDINAKDDLGNEVHS 597
           +N+ E +++ + AFD  TQT DL  L  +  +F  E +N   D+ NE  S
Sbjct: 432 MNNVETVSDWLTAFDNFTQTLDLDQLEKDVAAF-VESLNF-TDINNETQS 479


>AF016437-3|AAB65885.2|  405|Caenorhabditis elegans Hypothetical
           protein F13H6.4 protein.
          Length = 405

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
 Frame = +1

Query: 130 KSKIFRTYADQILLSNKQDTTQSSVLNIDSNE--STRMKQAKTDLHMKEIDEYIHVTNCT 303
           ++KIFR +A+    +    TT        S+E  S   K+A     M  +DEY  V    
Sbjct: 130 QAKIFREFAEFKGFTGGDSTTLLEWYKNQSSETLSDLRKEAPKKQMMTGVDEYEGVI--- 186

Query: 304 KTAIANPDFDVQDVGAEKFNLSFDGNQIFEVKNEV 408
             A  NP+F   D G   F     GN   E   E+
Sbjct: 187 --ASMNPEFSPADAGLALFPKGVYGNDTAENPEEM 219


>Z22176-13|CAO82058.1| 1185|Caenorhabditis elegans Hypothetical
           protein ZK1098.10d protein.
          Length = 1185

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 331 DVQDVGAEKFNLSFDGNQIFEVKNEVKAKENSLGNILGHLNSGEII 468
           D+  +G E  NL  + +++ ++KN +   +N L N +  LNS  +I
Sbjct: 328 DLTGMGREVENLIKENSELLDMKNALNIVKNDLINQVDELNSENMI 373


>Z22176-10|CAD45611.1| 1157|Caenorhabditis elegans Hypothetical
           protein ZK1098.10b protein.
          Length = 1157

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 331 DVQDVGAEKFNLSFDGNQIFEVKNEVKAKENSLGNILGHLNSGEII 468
           D+  +G E  NL  + +++ ++KN +   +N L N +  LNS  +I
Sbjct: 328 DLTGMGREVENLIKENSELLDMKNALNIVKNDLINQVDELNSENMI 373


>AF424978-1|AAL23934.1| 1157|Caenorhabditis elegans UNC-16 protein.
          Length = 1157

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 331 DVQDVGAEKFNLSFDGNQIFEVKNEVKAKENSLGNILGHLNSGEII 468
           D+  +G E  NL  + +++ ++KN +   +N L N +  LNS  +I
Sbjct: 328 DLTGMGREVENLIKENSELLDMKNALNIVKNDLINQVDELNSENMI 373


>U41107-11|AAC71161.1|  454|Caenorhabditis elegans Hypothetical
           protein F55C12.1a protein.
          Length = 454

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 63  SQANQRRKFQRTYKLVQDKSVKEI*NIPYLRRSNSIVKQTRHN 191
           SQ NQ   F + Y  ++++++        L+  NS++K+  HN
Sbjct: 51  SQMNQLNSFTKRYSELEERNMSLSDERTRLKTENSVLKERMHN 93


>U41107-9|AAK73877.1|  471|Caenorhabditis elegans Hypothetical
           protein F55C12.1b protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 63  SQANQRRKFQRTYKLVQDKSVKEI*NIPYLRRSNSIVKQTRHN 191
           SQ NQ   F + Y  ++++++        L+  NS++K+  HN
Sbjct: 68  SQMNQLNSFTKRYSELEERNMSLSDERTRLKTENSVLKERMHN 110


>U41107-8|AAN39670.1|  468|Caenorhabditis elegans Hypothetical
           protein F55C12.1d protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 63  SQANQRRKFQRTYKLVQDKSVKEI*NIPYLRRSNSIVKQTRHN 191
           SQ NQ   F + Y  ++++++        L+  NS++K+  HN
Sbjct: 65  SQMNQLNSFTKRYSELEERNMSLSDERTRLKTENSVLKERMHN 107


>AL132848-2|CAB60385.2|  333|Caenorhabditis elegans Hypothetical
           protein Y47H10A.3 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 235 MKQAKTDLHMKEIDEYIHVTNCTKTAIANPDF 330
           +   K +L M+ + +Y+H TNC  T    PDF
Sbjct: 53  LDSGKGELMMESLLDYVHQTNCLTT--VKPDF 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,835,934
Number of Sequences: 27780
Number of extensions: 305192
Number of successful extensions: 924
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)