Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6g06
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    25   0.98 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.2  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        22   5.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   6.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   6.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.1  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +1

Query: 235 MKQAKTDLHMKEIDEYIHVTNCTKTAIANPDFDVQDVGAEKFN 363
           +KQ  ++++ ++ +EYI + +     IAN D +  +V     N
Sbjct: 357 IKQISSNIYERQNNEYIWIVSNKYQKIANGDLNFNEVNFRILN 399


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 73  TNAENFNALINLYKINPLKKSKIFRTYADQIL 168
           TNA      +++YK   L + ++F  Y  Q+L
Sbjct: 74  TNAAAVKEFLSIYKHGMLPRGELFSLYYPQLL 105


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 73  TNAENFNALINLYKINPLKKSKIFRTYADQIL 168
           TNA      +++YK   L + ++F  Y  Q+L
Sbjct: 74  TNAAAVKEFLSIYKHGMLPRGELFSLYYPQLL 105


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 85  NFNALINLYKINPL 126
           NF+ + NL KI+PL
Sbjct: 298 NFSGIFNLVKISPL 311


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 85  NFNALINLYKINPL 126
           NF+ + NL KI+PL
Sbjct: 48  NFSGIFNLVKISPL 61


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 217 NQYSRHYFVLCLVCLTIEF 161
           ++YSR  F +C VC  + +
Sbjct: 405 DKYSRIVFPVCFVCFNLMY 423


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 217 NQYSRHYFVLCLVCLTIEF 161
           ++YSR  F +C VC  + +
Sbjct: 405 DKYSRIVFPVCFVCFNLMY 423


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 217 NQYSRHYFVLCLVCLTIEF 161
           ++YSR  F +C VC  + +
Sbjct: 343 DKYSRIVFPVCFVCFNLMY 361


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 274 DEYIHVTNCTKTAIANPDFDVQDV 345
           DEY+ V +     I N DF+  DV
Sbjct: 373 DEYMLVLSNRMQKIVNDDFNFDDV 396


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 131 FFNGFILYKFISALKFSALVRLTLWP 54
           F NG +LY    +L  S  + L L+P
Sbjct: 143 FPNGSVLYSIRISLTLSCPMNLKLYP 168


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 131 FFNGFILYKFISALKFSALVRLTLWP 54
           F NG +LY    +L  S  + L L+P
Sbjct: 143 FPNGSVLYSIRISLTLSCPMNLKLYP 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,248
Number of Sequences: 438
Number of extensions: 3944
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)