Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6g03
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    30   0.28 
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    27   2.0  
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    27   2.6  
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    26   4.5  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   7.9  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    25   7.9  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 596 DMRREEERLKTFDQ--WPVTFLTPEQLARNGFYY 691
           +M    +RL TF +  WP    TPE LA  GFYY
Sbjct: 18  EMCNYSKRLDTFQKKKWPRAKPTPETLATVGFYY 51


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = +1

Query: 127 PRHYARMRI*GGRRNTIPPPRQTMCTTSISTTMLEASQTPLYKENKINLSGYIVYSFRE 303
           PR+YA +RI    R+  P  R+ +CT   +T ++     P+  +N++   G  V+S R+
Sbjct: 107 PRYYA-LRIEDLPRDLTP--REFLCTFLFATNVVSVELNPVSVDNEV-AHGLAVFSSRD 161


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 255 RK*NKSFWIHSV*F*RNVHSKCYVNVSCRRIRLDLIIQK 371
           RK  ++   HS+ + R ++S  ++ V+C  +RL L I K
Sbjct: 164 RKTKETSQSHSISYPRLLYSSAFIYVACLLLRLPLTIHK 202


>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 321 NTLNAHFSKTIHYVSRKIYFIFFI 250
           +T+  + + T H  SR+IYF+FFI
Sbjct: 258 STMAINATITSHQRSRRIYFLFFI 281


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +1

Query: 169 NTIPPPRQTMCTTSI---STTMLEASQTPLYKENKINLSGYIVYSFREM 306
           NT+PP  Q   +T++   S+  L +S TP+   N +     +  SF EM
Sbjct: 571 NTLPPTSQGATSTTVSSASSNFLSSSCTPIDDTNSVT-GSTLSCSFDEM 618


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 309 AHFSKTIHYVSRKIYFI 259
           +HFS++I YV   IYF+
Sbjct: 391 SHFSRSIQYVKDAIYFL 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,722
Number of Sequences: 5004
Number of extensions: 49440
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)