Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6g03
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL008869-2|CAC42315.1|  810|Caenorhabditis elegans Hypothetical ...    29   3.2  
AL008869-1|CAA15516.1|  808|Caenorhabditis elegans Hypothetical ...    29   3.2  
AB032749-1|BAA92158.1|  810|Caenorhabditis elegans EAT-20B protein.    29   3.2  
AB032748-1|BAA92157.1|  808|Caenorhabditis elegans EAT-20A protein.    29   3.2  
U34902-1|AAA97607.1|  393|Caenorhabditis elegans sma-3 protein.        28   5.6  
U00046-9|AAC47050.2|  393|Caenorhabditis elegans Small protein 3...    28   5.6  
AY741200-1|AAU89102.1|  596|Caenorhabditis elegans STE20-like se...    28   7.4  
AL132898-15|CAC14417.2|  596|Caenorhabditis elegans Hypothetical...    28   7.4  

>AL008869-2|CAC42315.1|  810|Caenorhabditis elegans Hypothetical
           protein H30A04.1b protein.
          Length = 810

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 584 PDMPDMRREEERLKTFDQWPVTFLTPE--QLARNG 682
           P +PD   EEE  +T ++   TF TP   Q+A NG
Sbjct: 538 PSVPDENEEEEEEETTEETEETFPTPSTMQVATNG 572


>AL008869-1|CAA15516.1|  808|Caenorhabditis elegans Hypothetical
           protein H30A04.1a protein.
          Length = 808

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 584 PDMPDMRREEERLKTFDQWPVTFLTPE--QLARNG 682
           P +PD   EEE  +T ++   TF TP   Q+A NG
Sbjct: 538 PSVPDENEEEEEEETTEETEETFPTPSTMQVATNG 572


>AB032749-1|BAA92158.1|  810|Caenorhabditis elegans EAT-20B protein.
          Length = 810

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 584 PDMPDMRREEERLKTFDQWPVTFLTPE--QLARNG 682
           P +PD   EEE  +T ++   TF TP   Q+A NG
Sbjct: 538 PSVPDENEEEEEEETTEETEETFPTPSTMQVATNG 572


>AB032748-1|BAA92157.1|  808|Caenorhabditis elegans EAT-20A protein.
          Length = 808

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 584 PDMPDMRREEERLKTFDQWPVTFLTPE--QLARNG 682
           P +PD   EEE  +T ++   TF TP   Q+A NG
Sbjct: 538 PSVPDENEEEEEEETTEETEETFPTPSTMQVATNG 572


>U34902-1|AAA97607.1|  393|Caenorhabditis elegans sma-3 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 359 NNSKMPLFVDTKNRNVAKN 415
           NNS MP+FV +KN N+  N
Sbjct: 275 NNSDMPVFVQSKNTNLMMN 293


>U00046-9|AAC47050.2|  393|Caenorhabditis elegans Small protein 3
           protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 359 NNSKMPLFVDTKNRNVAKN 415
           NNS MP+FV +KN N+  N
Sbjct: 275 NNSDMPVFVQSKNTNLMMN 293


>AY741200-1|AAU89102.1|  596|Caenorhabditis elegans STE20-like
           serine/threonine kinase protein.
          Length = 596

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 102 HPNDVDVEPSSLRTHAHLGWSSQYDTATKADDVYD 206
           H +   V    LR  AH  W  +YD+  ++DD  D
Sbjct: 411 HHSSKKVASGKLRKDAHGNWEFEYDSPQESDDDSD 445


>AL132898-15|CAC14417.2|  596|Caenorhabditis elegans Hypothetical
           protein Y59A8B.23 protein.
          Length = 596

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 102 HPNDVDVEPSSLRTHAHLGWSSQYDTATKADDVYD 206
           H +   V    LR  AH  W  +YD+  ++DD  D
Sbjct: 411 HHSSKKVASGKLRKDAHGNWEFEYDSPQESDDDSD 445


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,859,522
Number of Sequences: 27780
Number of extensions: 285590
Number of successful extensions: 671
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)