Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6g03
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.92 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.6  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.7  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    22   6.5  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +1

Query: 181 PPRQTMCTTSISTTMLEASQTPLYKENKINLSGYIVYS 294
           P    + TTS+ +  LE  +TP Y         Y +Y+
Sbjct: 740 PRASLVSTTSVKSLRLEGDETPPYGMELTEAEHYALYT 777


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 181  PPRQTMCTTSISTTM-LEASQTPLYKENKINLSGYIV 288
            PP  T CTT  S T+ +     PL   N + ++GY V
Sbjct: 1084 PPHDTTCTTLTSQTIRISWMSPPLSAANGV-ITGYKV 1119


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 623 SDVPLHDACR 594
           SD+PLHDA R
Sbjct: 331 SDIPLHDATR 340


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 623 SDVPLHDACR 594
           SD+PLHDA R
Sbjct: 411 SDIPLHDATR 420


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 623 SDVPLHDACR 594
           SD+PLHDA R
Sbjct: 331 SDIPLHDATR 340


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 576 TSFLICPTCVVKRNV*KHLI 635
           TS+ + PT  +K N  +H+I
Sbjct: 18  TSYFVTPTMSIKCNCKRHVI 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,239
Number of Sequences: 438
Number of extensions: 3645
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)