Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6f24
(654 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014297-3451|AAF56229.2| 148|Drosophila melanogaster CG6000-PA... 128 9e-30
AY070705-1|AAL48176.1| 110|Drosophila melanogaster RH54517p pro... 92 7e-19
AE014297-1577|AAF54857.2| 110|Drosophila melanogaster CG12279-P... 92 7e-19
X07311-1|CAA30276.1| 111|Drosophila melanogaster heat shock pro... 84 1e-16
AE014296-1626|AAF50291.1| 111|Drosophila melanogaster CG4456-PB... 84 1e-16
AE014296-1625|AAN11961.1| 111|Drosophila melanogaster CG4456-PA... 84 1e-16
Z50152-2|CAA90514.1| 3358|Drosophila melanogaster trithorax prot... 33 0.45
Z50152-1|CAA90513.1| 3726|Drosophila melanogaster trithorax prot... 33 0.45
Z31725-2|CAA83515.1| 3358|Drosophila melanogaster predicted trit... 33 0.45
Z31725-1|CAA83516.1| 3726|Drosophila melanogaster predicted trit... 33 0.45
M31617-1|AAA29025.1| 3759|Drosophila melanogaster protein ( D.me... 33 0.45
AE014297-1828|AAX52951.1| 3358|Drosophila melanogaster CG8651-PE... 33 0.45
AE014297-1827|AAN13601.1| 3358|Drosophila melanogaster CG8651-PC... 33 0.45
AE014297-1826|AAN13600.1| 3358|Drosophila melanogaster CG8651-PB... 33 0.45
AE014297-1825|AAN13599.1| 3726|Drosophila melanogaster CG8651-PD... 33 0.45
AE014297-1824|AAF55041.2| 3726|Drosophila melanogaster CG8651-PA... 33 0.45
BT010247-1|AAQ23565.1| 1508|Drosophila melanogaster RE40452p pro... 29 7.3
AJ312135-1|CAC39164.1| 1531|Drosophila melanogaster turtle prote... 29 7.3
AE014134-715|AAF51029.3| 1508|Drosophila melanogaster CG15427-PD... 29 7.3
D17389-4|BAA04212.1| 5112|Drosophila melanogaster ryanodine rece... 28 9.6
D17389-3|BAA41471.1| 5112|Drosophila melanogaster ryanodine rece... 28 9.6
D17389-2|BAA41470.1| 5126|Drosophila melanogaster ryanodine rece... 28 9.6
D17389-1|BAA41469.1| 5126|Drosophila melanogaster ryanodine rece... 28 9.6
AE014297-4347|AAF56870.1| 1302|Drosophila melanogaster CG11898-P... 28 9.6
AE013599-723|AAM71084.1| 5113|Drosophila melanogaster CG10844-PD... 28 9.6
AE013599-722|AAM71083.1| 5127|Drosophila melanogaster CG10844-PC... 28 9.6
AE013599-721|AAM71082.1| 5113|Drosophila melanogaster CG10844-PB... 28 9.6
AE013599-720|AAF59036.2| 5127|Drosophila melanogaster CG10844-PA... 28 9.6
>AE014297-3451|AAF56229.2| 148|Drosophila melanogaster CG6000-PA,
isoform A protein.
Length = 148
Score = 128 bits (308), Expect = 9e-30
Identities = 70/144 (48%), Positives = 89/144 (61%)
Frame = +2
Query: 221 LKLNYARKQLSSNEYKAIPQLNALSLRLYSESKVETKVADYDEVVKAISNNNILLIDVRE 400
+ L AR Q+ + + Q N L R YS++ + + DYD V K S LLIDVRE
Sbjct: 2 MALRVARSQIPFSTARNT-QSNLLQ-RFYSQAP-QIGIVDYDVVKKLPSEPQKLLIDVRE 58
Query: 401 PDEVKDHGHIPNSINIPLGTISTVLGEMSDKEFNKTYKRPKPNQNTELIFYCMAGRRSAK 580
P+E+K+ G IP SINIPLG +S L S++ F Y R KP TE+IF+C G+RS K
Sbjct: 59 PEELKETGQIPASINIPLGVVSQELAA-SEQLFKSKYGREKPKPETEIIFHCKIGKRSLK 117
Query: 581 AQESAINLGFKNTKNYQGSWTEWA 652
A E+A LGFKN KNYQGSW +WA
Sbjct: 118 AAEAAAALGFKNVKNYQGSWLDWA 141
>AY070705-1|AAL48176.1| 110|Drosophila melanogaster RH54517p
protein.
Length = 110
Score = 91.9 bits (218), Expect = 7e-19
Identities = 47/106 (44%), Positives = 63/106 (59%)
Frame = +2
Query: 332 VADYDEVVKAISNNNILLIDVREPDEVKDHGHIPNSINIPLGTISTVLGEMSDKEFNKTY 511
+A Y+EV ++ L DVR E+K+ G +P SINIPL + L + +++F +TY
Sbjct: 1 MATYEEVKDIPNHPEKYLFDVRNESELKETGVLPASINIPLSELEKALN-LPEEDFAQTY 59
Query: 512 KRPKPNQNTELIFYCMAGRRSAKAQESAINLGFKNTKNYQGSWTEW 649
R KP + LIF C AG R+A+A A LGF N K Y GSWTEW
Sbjct: 60 GRVKPAVDAVLIFSCKAGGRAARAANLASTLGFTNAKAYAGSWTEW 105
>AE014297-1577|AAF54857.2| 110|Drosophila melanogaster CG12279-PA
protein.
Length = 110
Score = 91.9 bits (218), Expect = 7e-19
Identities = 47/106 (44%), Positives = 63/106 (59%)
Frame = +2
Query: 332 VADYDEVVKAISNNNILLIDVREPDEVKDHGHIPNSINIPLGTISTVLGEMSDKEFNKTY 511
+A Y+EV ++ L DVR E+K+ G +P SINIPL + L + +++F +TY
Sbjct: 1 MATYEEVKDIPNHPEKYLFDVRNESELKETGVLPASINIPLSELEKALN-LPEEDFAQTY 59
Query: 512 KRPKPNQNTELIFYCMAGRRSAKAQESAINLGFKNTKNYQGSWTEW 649
R KP + LIF C AG R+A+A A LGF N K Y GSWTEW
Sbjct: 60 GRVKPAVDAVLIFSCKAGGRAARAANLASTLGFTNAKAYAGSWTEW 105
>X07311-1|CAA30276.1| 111|Drosophila melanogaster heat shock
protein protein.
Length = 111
Score = 84.2 bits (199), Expect = 1e-16
Identities = 40/107 (37%), Positives = 62/107 (57%)
Frame = +2
Query: 332 VADYDEVVKAISNNNILLIDVREPDEVKDHGHIPNSINIPLGTISTVLGEMSDKEFNKTY 511
+A Y++V ++ ++ LIDVR +E++ G IP SINIPL + L + F Y
Sbjct: 1 MATYEQVKDVPNHPDVYLIDVRRKEELQQTGFIPASINIPLDELDKALN-LDGSAFKNKY 59
Query: 512 KRPKPNQNTELIFYCMAGRRSAKAQESAINLGFKNTKNYQGSWTEWA 652
R KP + + +IF C +G R +A++ A + G+ N Y+GSW EWA
Sbjct: 60 GRSKPEKQSPIIFTCRSGNRVLEAEKIAKSQGYSNVVIYKGSWNEWA 106
>AE014296-1626|AAF50291.1| 111|Drosophila melanogaster CG4456-PB,
isoform B protein.
Length = 111
Score = 84.2 bits (199), Expect = 1e-16
Identities = 40/107 (37%), Positives = 62/107 (57%)
Frame = +2
Query: 332 VADYDEVVKAISNNNILLIDVREPDEVKDHGHIPNSINIPLGTISTVLGEMSDKEFNKTY 511
+A Y++V ++ ++ LIDVR +E++ G IP SINIPL + L + F Y
Sbjct: 1 MATYEQVKDVPNHPDVYLIDVRRKEELQQTGFIPASINIPLDELDKALN-LDGSAFKNKY 59
Query: 512 KRPKPNQNTELIFYCMAGRRSAKAQESAINLGFKNTKNYQGSWTEWA 652
R KP + + +IF C +G R +A++ A + G+ N Y+GSW EWA
Sbjct: 60 GRSKPEKQSPIIFTCRSGNRVLEAEKIAKSQGYSNVVIYKGSWNEWA 106
>AE014296-1625|AAN11961.1| 111|Drosophila melanogaster CG4456-PA,
isoform A protein.
Length = 111
Score = 84.2 bits (199), Expect = 1e-16
Identities = 40/107 (37%), Positives = 62/107 (57%)
Frame = +2
Query: 332 VADYDEVVKAISNNNILLIDVREPDEVKDHGHIPNSINIPLGTISTVLGEMSDKEFNKTY 511
+A Y++V ++ ++ LIDVR +E++ G IP SINIPL + L + F Y
Sbjct: 1 MATYEQVKDVPNHPDVYLIDVRRKEELQQTGFIPASINIPLDELDKALN-LDGSAFKNKY 59
Query: 512 KRPKPNQNTELIFYCMAGRRSAKAQESAINLGFKNTKNYQGSWTEWA 652
R KP + + +IF C +G R +A++ A + G+ N Y+GSW EWA
Sbjct: 60 GRSKPEKQSPIIFTCRSGNRVLEAEKIAKSQGYSNVVIYKGSWNEWA 106
>Z50152-2|CAA90514.1| 3358|Drosophila melanogaster trithorax protein
trxI protein.
Length = 3358
Score = 32.7 bits (71), Expect = 0.45
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 254 SNEYKAIPQLNALSLRLYSESKVETKVADYDEVVKAISNNNILL--IDVREPDEVKDHGH 427
S+ Y+A+ +N L RLY SK K+ +Y V I N++ L +DV V DH +
Sbjct: 1537 SDSYEAVVPINFLCSRLYWSSKEPWKIVEY-TVRTTIQNSSSTLTALDVGRNYTV-DHTN 1594
Query: 428 IPNSINIPLG 457
PNS + LG
Sbjct: 1595 -PNSKEVQLG 1603
>Z50152-1|CAA90513.1| 3726|Drosophila melanogaster trithorax protein
trxII protein.
Length = 3726
Score = 32.7 bits (71), Expect = 0.45
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 254 SNEYKAIPQLNALSLRLYSESKVETKVADYDEVVKAISNNNILL--IDVREPDEVKDHGH 427
S+ Y+A+ +N L RLY SK K+ +Y V I N++ L +DV V DH +
Sbjct: 1905 SDSYEAVVPINFLCSRLYWSSKEPWKIVEY-TVRTTIQNSSSTLTALDVGRNYTV-DHTN 1962
Query: 428 IPNSINIPLG 457
PNS + LG
Sbjct: 1963 -PNSKEVQLG 1971
>Z31725-2|CAA83515.1| 3358|Drosophila melanogaster predicted trithorax
protein protein.
Length = 3358
Score = 32.7 bits (71), Expect = 0.45
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 254 SNEYKAIPQLNALSLRLYSESKVETKVADYDEVVKAISNNNILL--IDVREPDEVKDHGH 427
S+ Y+A+ +N L RLY SK K+ +Y V I N++ L +DV V DH +
Sbjct: 1537 SDSYEAVVPINFLCSRLYWSSKEPWKIVEY-TVRTTIQNSSSTLTALDVGRNYTV-DHTN 1594
Query: 428 IPNSINIPLG 457
PNS + LG
Sbjct: 1595 -PNSKEVQLG 1603
>Z31725-1|CAA83516.1| 3726|Drosophila melanogaster predicted trithorax
protein protein.
Length = 3726
Score = 32.7 bits (71), Expect = 0.45
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 254 SNEYKAIPQLNALSLRLYSESKVETKVADYDEVVKAISNNNILL--IDVREPDEVKDHGH 427
S+ Y+A+ +N L RLY SK K+ +Y V I N++ L +DV V DH +
Sbjct: 1905 SDSYEAVVPINFLCSRLYWSSKEPWKIVEY-TVRTTIQNSSSTLTALDVGRNYTV-DHTN 1962
Query: 428 IPNSINIPLG 457
PNS + LG
Sbjct: 1963 -PNSKEVQLG 1971
>M31617-1|AAA29025.1| 3759|Drosophila melanogaster protein (
D.melanogaster zinc-binding protein (trithorax) mRNA,
complete cds. ).
Length = 3759
Score = 32.7 bits (71), Expect = 0.45
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 254 SNEYKAIPQLNALSLRLYSESKVETKVADYDEVVKAISNNNILL--IDVREPDEVKDHGH 427
S+ Y+A+ +N L RLY SK K+ +Y V I N++ L +DV V DH +
Sbjct: 1905 SDSYEAVVPINFLCSRLYWSSKEPWKIVEY-TVRTTIQNSSSTLTALDVGRNYTV-DHTN 1962
Query: 428 IPNSINIPLG 457
PNS + LG
Sbjct: 1963 -PNSKEVQLG 1971
>AE014297-1828|AAX52951.1| 3358|Drosophila melanogaster CG8651-PE,
isoform E protein.
Length = 3358
Score = 32.7 bits (71), Expect = 0.45
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 254 SNEYKAIPQLNALSLRLYSESKVETKVADYDEVVKAISNNNILL--IDVREPDEVKDHGH 427
S+ Y+A+ +N L RLY SK K+ +Y V I N++ L +DV V DH +
Sbjct: 1537 SDSYEAVVPINFLCSRLYWSSKEPWKIVEY-TVRTTIQNSSSTLTALDVGRNYTV-DHTN 1594
Query: 428 IPNSINIPLG 457
PNS + LG
Sbjct: 1595 -PNSKEVQLG 1603
>AE014297-1827|AAN13601.1| 3358|Drosophila melanogaster CG8651-PC,
isoform C protein.
Length = 3358
Score = 32.7 bits (71), Expect = 0.45
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 254 SNEYKAIPQLNALSLRLYSESKVETKVADYDEVVKAISNNNILL--IDVREPDEVKDHGH 427
S+ Y+A+ +N L RLY SK K+ +Y V I N++ L +DV V DH +
Sbjct: 1537 SDSYEAVVPINFLCSRLYWSSKEPWKIVEY-TVRTTIQNSSSTLTALDVGRNYTV-DHTN 1594
Query: 428 IPNSINIPLG 457
PNS + LG
Sbjct: 1595 -PNSKEVQLG 1603
>AE014297-1826|AAN13600.1| 3358|Drosophila melanogaster CG8651-PB,
isoform B protein.
Length = 3358
Score = 32.7 bits (71), Expect = 0.45
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 254 SNEYKAIPQLNALSLRLYSESKVETKVADYDEVVKAISNNNILL--IDVREPDEVKDHGH 427
S+ Y+A+ +N L RLY SK K+ +Y V I N++ L +DV V DH +
Sbjct: 1537 SDSYEAVVPINFLCSRLYWSSKEPWKIVEY-TVRTTIQNSSSTLTALDVGRNYTV-DHTN 1594
Query: 428 IPNSINIPLG 457
PNS + LG
Sbjct: 1595 -PNSKEVQLG 1603
>AE014297-1825|AAN13599.1| 3726|Drosophila melanogaster CG8651-PD,
isoform D protein.
Length = 3726
Score = 32.7 bits (71), Expect = 0.45
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 254 SNEYKAIPQLNALSLRLYSESKVETKVADYDEVVKAISNNNILL--IDVREPDEVKDHGH 427
S+ Y+A+ +N L RLY SK K+ +Y V I N++ L +DV V DH +
Sbjct: 1905 SDSYEAVVPINFLCSRLYWSSKEPWKIVEY-TVRTTIQNSSSTLTALDVGRNYTV-DHTN 1962
Query: 428 IPNSINIPLG 457
PNS + LG
Sbjct: 1963 -PNSKEVQLG 1971
>AE014297-1824|AAF55041.2| 3726|Drosophila melanogaster CG8651-PA,
isoform A protein.
Length = 3726
Score = 32.7 bits (71), Expect = 0.45
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 254 SNEYKAIPQLNALSLRLYSESKVETKVADYDEVVKAISNNNILL--IDVREPDEVKDHGH 427
S+ Y+A+ +N L RLY SK K+ +Y V I N++ L +DV V DH +
Sbjct: 1905 SDSYEAVVPINFLCSRLYWSSKEPWKIVEY-TVRTTIQNSSSTLTALDVGRNYTV-DHTN 1962
Query: 428 IPNSINIPLG 457
PNS + LG
Sbjct: 1963 -PNSKEVQLG 1971
>BT010247-1|AAQ23565.1| 1508|Drosophila melanogaster RE40452p protein.
Length = 1508
Score = 28.7 bits (61), Expect = 7.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 572 SAKAQESAINLGFKNTKNYQGSWTEW 649
S +++ S+ G KNT N+ GS +EW
Sbjct: 1310 SPESRSSSSGFGSKNTSNHPGSTSEW 1335
>AJ312135-1|CAC39164.1| 1531|Drosophila melanogaster turtle protein,
isoform 4 protein.
Length = 1531
Score = 28.7 bits (61), Expect = 7.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 572 SAKAQESAINLGFKNTKNYQGSWTEW 649
S +++ S+ G KNT N+ GS +EW
Sbjct: 1333 SPESRSSSSGFGSKNTSNHPGSTSEW 1358
>AE014134-715|AAF51029.3| 1508|Drosophila melanogaster CG15427-PD,
isoform D protein.
Length = 1508
Score = 28.7 bits (61), Expect = 7.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 572 SAKAQESAINLGFKNTKNYQGSWTEW 649
S +++ S+ G KNT N+ GS +EW
Sbjct: 1310 SPESRSSSSGFGSKNTSNHPGSTSEW 1335
>D17389-4|BAA04212.1| 5112|Drosophila melanogaster ryanodine receptor
homologue protein.
Length = 5112
Score = 28.3 bits (60), Expect = 9.6
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = -3
Query: 514 LVGFIK--FFI*HFTKYS*YCT*RYIYTI 434
+VGF K F+I ++T Y+ +C RYI+ I
Sbjct: 4438 IVGFFKIIFYIFYYTGYAHFCVVRYIFGI 4466
>D17389-3|BAA41471.1| 5112|Drosophila melanogaster ryanodine receptor
homologue protein.
Length = 5112
Score = 28.3 bits (60), Expect = 9.6
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = -3
Query: 514 LVGFIK--FFI*HFTKYS*YCT*RYIYTI 434
+VGF K F+I ++T Y+ +C RYI+ I
Sbjct: 4438 IVGFFKIIFYIFYYTGYAHFCVVRYIFGI 4466
>D17389-2|BAA41470.1| 5126|Drosophila melanogaster ryanodine receptor
homologue protein.
Length = 5126
Score = 28.3 bits (60), Expect = 9.6
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = -3
Query: 514 LVGFIK--FFI*HFTKYS*YCT*RYIYTI 434
+VGF K F+I ++T Y+ +C RYI+ I
Sbjct: 4452 IVGFFKIIFYIFYYTGYAHFCVVRYIFGI 4480
>D17389-1|BAA41469.1| 5126|Drosophila melanogaster ryanodine receptor
homologue protein.
Length = 5126
Score = 28.3 bits (60), Expect = 9.6
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = -3
Query: 514 LVGFIK--FFI*HFTKYS*YCT*RYIYTI 434
+VGF K F+I ++T Y+ +C RYI+ I
Sbjct: 4452 IVGFFKIIFYIFYYTGYAHFCVVRYIFGI 4480
>AE014297-4347|AAF56870.1| 1302|Drosophila melanogaster CG11898-PA
protein.
Length = 1302
Score = 28.3 bits (60), Expect = 9.6
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +2
Query: 77 NINVITIKAYFNLYTSLNVIVLLLVMFRCGRRITQLIIRKSRTTSAGYLKLNYARKQLSS 256
++ + T K YF + V+VL+L+MF ++ R S T +L ++
Sbjct: 696 SVKLQTYKEYFKVLGHPLVVVLILLMF--------VVARSSEATMDIFLSKWATWEETEP 747
Query: 257 NEYKAIPQLNALSLRL 304
N+++ IP+ + LR+
Sbjct: 748 NQHEPIPEYHRTRLRM 763
>AE013599-723|AAM71084.1| 5113|Drosophila melanogaster CG10844-PD,
isoform D protein.
Length = 5113
Score = 28.3 bits (60), Expect = 9.6
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = -3
Query: 514 LVGFIK--FFI*HFTKYS*YCT*RYIYTI 434
+VGF K F+I ++T Y+ +C RYI+ I
Sbjct: 4439 IVGFFKIIFYIFYYTGYAHFCVVRYIFGI 4467
>AE013599-722|AAM71083.1| 5127|Drosophila melanogaster CG10844-PC,
isoform C protein.
Length = 5127
Score = 28.3 bits (60), Expect = 9.6
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = -3
Query: 514 LVGFIK--FFI*HFTKYS*YCT*RYIYTI 434
+VGF K F+I ++T Y+ +C RYI+ I
Sbjct: 4453 IVGFFKIIFYIFYYTGYAHFCVVRYIFGI 4481
>AE013599-721|AAM71082.1| 5113|Drosophila melanogaster CG10844-PB,
isoform B protein.
Length = 5113
Score = 28.3 bits (60), Expect = 9.6
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = -3
Query: 514 LVGFIK--FFI*HFTKYS*YCT*RYIYTI 434
+VGF K F+I ++T Y+ +C RYI+ I
Sbjct: 4439 IVGFFKIIFYIFYYTGYAHFCVVRYIFGI 4467
>AE013599-720|AAF59036.2| 5127|Drosophila melanogaster CG10844-PA,
isoform A protein.
Length = 5127
Score = 28.3 bits (60), Expect = 9.6
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = -3
Query: 514 LVGFIK--FFI*HFTKYS*YCT*RYIYTI 434
+VGF K F+I ++T Y+ +C RYI+ I
Sbjct: 4453 IVGFFKIIFYIFYYTGYAHFCVVRYIFGI 4481
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,813,099
Number of Sequences: 53049
Number of extensions: 385267
Number of successful extensions: 904
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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