Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6f23
         (678 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    25   0.75 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.75 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    25   0.75 
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   9.3  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 342 EGPPMNQDPTKKAQPGGIKPDTVCFHCAPTPGPPW 446
           +GPP  Q P ++    G +P        P+P  PW
Sbjct: 201 QGPPHQQPPIQQQPNQGQQPPGNTAAALPSPLYPW 235


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = -2

Query: 329 HYWWKHRIYCASFIIILLGILVIRATRY 246
           ++++ H ++C +FII  + +L +    Y
Sbjct: 260 YFYYMHLLFCCAFIIFTMHLLFLLCIYY 287


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 342 EGPPMNQDPTKKAQPGGIKPDTVCFHCAPTPGPPW 446
           +GPP  Q P ++    G +P        P+P  PW
Sbjct: 203 QGPPHQQPPIQQQPNQGQQPPGNTAAALPSPLYPW 237


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 367 GSWFMGGPSATGATIGGNT 311
           G+++M  PSA    IGG T
Sbjct: 154 GNYWMLDPSAEDVFIGGTT 172


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,088
Number of Sequences: 336
Number of extensions: 3901
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)