Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6f22
         (556 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     25   0.58 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    25   0.58 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           25   0.58 
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    25   0.58 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   4.1  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    21   5.5  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   5.5  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   7.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   9.5  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 421 PSVEHNSAAYIAQSNSLLENEHITRQ 344
           PS E+N  +YI        N HI +Q
Sbjct: 33  PSEEYNQNSYIPPGGDFFGNHHIQQQ 58


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 421 PSVEHNSAAYIAQSNSLLENEHITRQ 344
           PS E+N  +YI        N HI +Q
Sbjct: 33  PSEEYNQNSYIPPGGDFFGNHHIQQQ 58


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 421 PSVEHNSAAYIAQSNSLLENEHITRQ 344
           PS E+N  +YI        N HI +Q
Sbjct: 33  PSEEYNQNSYIPPGGDFFGNHHIQQQ 58


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 421 PSVEHNSAAYIAQSNSLLENEHITRQ 344
           PS E+N  +YI        N HI +Q
Sbjct: 33  PSEEYNQNSYIPPGGDFFGNHHIQQQ 58


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 125 NTDYEIWHEIVNCGEQDTIGLSTTTIDAENN 33
           +T  EI +  VN G+Q     S + +  ENN
Sbjct: 699 HTALEIMNRAVNIGQQPGAKESISYLSMENN 729


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 242 YNHLFEFHRN 213
           YN + EFHRN
Sbjct: 294 YNEICEFHRN 303


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 251 TYFYNHLFEFHRN 213
           T  YN L EFH+N
Sbjct: 290 TLGYNELCEFHKN 302


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -3

Query: 368 RKRAYYSSAVVLSRQVEEDECAGAHTVFPL 279
           RKR  Y     L R VEE +    H  F L
Sbjct: 353 RKRQKYHDPSQLLRHVEESDKQRTHQPFLL 382


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 95  RSRAKFHSPCCTNAH 139
           +S  + HSPC T ++
Sbjct: 29  KSEPQLHSPCATGSN 43


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,839
Number of Sequences: 336
Number of extensions: 2076
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13725787
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)