Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6f22
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        28   0.80 
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   5.7  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    25   9.9  

>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 475 FRRPNFIRQPRAFHAVNEPSVEHNSAAYIAQSNSLLENEHITRQ 344
           F R + IR+  AF     P+V+ +S A +  +NSL   + + R+
Sbjct: 132 FSRIHDIRELMAFRGYKFPAVDEDSIAVMKPNNSLRSAQELARE 175


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +3

Query: 180  KLVRCYCDLSIISVKLEQMVVEVGCRLAMVIECKREYRVGSG--AFIFFNLTRQDYS 344
            ++ R YC L++I  +LE+    V      VI C+R     S   +  + NL+  ++S
Sbjct: 982  EVARAYCQLAMIYHQLEKKEEAVELARKAVIVCERFLGFDSSETSLAYMNLSLYEFS 1038


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 468 LLKADIEIEADEENLQGIGASSRL 539
           L K ++ I  D+EN+ G+G  S+L
Sbjct: 274 LCKKNLRINMDDENVGGMGIHSQL 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,968,661
Number of Sequences: 5004
Number of extensions: 35206
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)