Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6f22
         (556 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004           38   0.005
09_06_0104 - 20888338-20888830,20888988-20889250                       36   0.016
05_04_0399 - 20955319-20955838,20955939-20956201                       36   0.022
01_06_1518 + 37925609-37925871,37925954-37926554                       36   0.022
06_03_0700 + 23650275-23650299,23650381-23652350                       29   3.3  
03_05_0366 - 23505755-23506441                                         29   3.3  

>12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004
          Length = 266

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 30/78 (38%), Positives = 37/78 (47%)
 Frame = +2

Query: 116 SPCCTNAHSYCEK*CWTSKGLEVSALLL*FINYFGETRTNGCRSRLPASYGD*VQAGIPC 295
           SPCC  AH+   K  WT    E    L+  IN  GE    GC   LP + G  ++ G  C
Sbjct: 4   SPCCEKAHT--NKGAWTK---EEDQRLIAHINQHGE----GCWRSLPKAAG-LLRCGKSC 53

Query: 296 GLRRIHLLQPDETRLQLT 349
            LR I+ L+PD  R   T
Sbjct: 54  RLRWINYLRPDLKRGNFT 71


>09_06_0104 - 20888338-20888830,20888988-20889250
          Length = 251

 Score = 36.3 bits (80), Expect = 0.016
 Identities = 29/78 (37%), Positives = 37/78 (47%)
 Frame = +2

Query: 116 SPCCTNAHSYCEK*CWTSKGLEVSALLL*FINYFGETRTNGCRSRLPASYGD*VQAGIPC 295
           SPCC  AH+   K  WT    E    L+ +I   GE    GC   LP + G  ++ G  C
Sbjct: 4   SPCCEKAHT--NKGAWTK---EEDDRLIAYIKAHGE----GCWRSLPKAAG-LLRCGKSC 53

Query: 296 GLRRIHLLQPDETRLQLT 349
            LR I+ L+PD  R   T
Sbjct: 54  RLRWINYLRPDLKRGNFT 71


>05_04_0399 - 20955319-20955838,20955939-20956201
          Length = 260

 Score = 35.9 bits (79), Expect = 0.022
 Identities = 28/80 (35%), Positives = 38/80 (47%)
 Frame = +2

Query: 116 SPCCTNAHSYCEK*CWTSKGLEVSALLL*FINYFGETRTNGCRSRLPASYGD*VQAGIPC 295
           SPCC  AH+   K  WT    E    L+ +I   GE    GC   LP + G  ++ G  C
Sbjct: 4   SPCCEKAHT--NKGAWTK---EEDQRLIAYIRAHGE----GCWRSLPKAAG-LLRCGKSC 53

Query: 296 GLRRIHLLQPDETRLQLTSN 355
            LR ++ L+PD  R   T +
Sbjct: 54  RLRWMNYLRPDLKRGNFTDD 73


>01_06_1518 + 37925609-37925871,37925954-37926554
          Length = 287

 Score = 35.9 bits (79), Expect = 0.022
 Identities = 28/80 (35%), Positives = 38/80 (47%)
 Frame = +2

Query: 116 SPCCTNAHSYCEK*CWTSKGLEVSALLL*FINYFGETRTNGCRSRLPASYGD*VQAGIPC 295
           SPCC  AH+   K  WT    E    L+ +I   GE    GC   LP + G  ++ G  C
Sbjct: 4   SPCCEKAHT--NKGAWTK---EEDQRLIAYIKAHGE----GCWRSLPKAAG-LLRCGKSC 53

Query: 296 GLRRIHLLQPDETRLQLTSN 355
            LR ++ L+PD  R   T +
Sbjct: 54  RLRWMNYLRPDLKRGNFTDD 73


>06_03_0700 + 23650275-23650299,23650381-23652350
          Length = 664

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
 Frame = +2

Query: 170 KGLEVSALLL*FINYFGETRTNGCRSRLPA--SYGD*VQAGIPCGLRRIHLLQ----PDE 331
           +GL ++   L  I Y+G+  T+   +RLPA    G  V A    GL+++  +     P  
Sbjct: 324 QGLSITDASLSVIGYYGKAITDLTLARLPAVGERGFWVMAN-ALGLQKLRFMSVSSCPGV 382

Query: 332 TRLQLTSNMLVFEQRIRLRNIGR-GVVLNARLVHGVESARLADEIRSSE 475
           T L L S +  F   ++  N+ + G V + RL    ESA++ + ++  E
Sbjct: 383 TDLALAS-IAKFCPSLKQLNLKKCGQVSDGRLKDFAESAKVLESLQIEE 430


>03_05_0366 - 23505755-23506441
          Length = 228

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +2

Query: 497 RRGKPTGNWRVVSPPPTS 550
           RR +PT  WRV SPPP S
Sbjct: 21  RRRQPTTWWRVDSPPPAS 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,141,265
Number of Sequences: 37544
Number of extensions: 236016
Number of successful extensions: 569
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)