Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6f19
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0227 + 42144437-42144446,42145059-42145428,42145528-421456...    30   1.6  
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686...    28   6.5  
05_07_0313 - 29159638-29161065                                         27   8.6  
03_03_0060 - 14157352-14158851                                         27   8.6  

>01_07_0227 +
           42144437-42144446,42145059-42145428,42145528-42145649,
           42145767-42145935,42146236-42146545,42146742-42146825,
           42147012-42147083,42147780-42147821,42147931-42148020,
           42148106-42148213,42148292-42148384,42148540-42148619,
           42148701-42148953,42151222-42151236
          Length = 605

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 386 CYIREFDGVLPFDSVTYSKEAECTRYFCAH 475
           C I+  + +L   +   SK A+C RYFC H
Sbjct: 182 CLIKMLEEILERAAEISSKLAQCDRYFCGH 211


>09_06_0317 - 22265786-22267618,22267874-22268446,22268546-22268677,
            22268931-22269137,22269287-22269388,22270742-22271032
          Length = 1045

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 506  ELSSDTPVCTFTKPEENTHIICVL 577
            +LSS+  VC F  P + + IIC L
Sbjct: 960  DLSSEEEVCEFMVPADESQIICAL 983


>05_07_0313 - 29159638-29161065
          Length = 475

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 457 GAFCFLRVCYRIKGKDTIELPDVTALKAIGVTVSSRP 347
           G F     CY + G+  +++P V+   A G +V+  P
Sbjct: 386 GGFSLFDTCYNLSGRRVVKVPTVSMHLAGGASVALPP 422


>03_03_0060 - 14157352-14158851
          Length = 499

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +2

Query: 386 CYIREFDGVLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELSSDTP 526
           C++R  DGV+P +S T   E  CT     +  V   SC  E+ +DTP
Sbjct: 251 CFVRSGDGVVP-ESTTTGMEL-CT--IGGNGGVSVGSCWREIVADTP 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,111,084
Number of Sequences: 37544
Number of extensions: 300187
Number of successful extensions: 644
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)