Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6f19
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82259-8|CAC70072.3|  410|Caenorhabditis elegans Hypothetical pr...    35   0.051
Z82259-1|CAB05126.3|  437|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AY305849-1|AAR11993.1|  437|Caenorhabditis elegans nuclear recep...    29   1.9  
AF067219-7|AAC17026.2|  372|Caenorhabditis elegans Innexin prote...    29   2.5  
AL132860-1|CAB60513.2|  616|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF022970-8|AAB69901.2|  231|Caenorhabditis elegans Nuclear hormo...    29   3.3  
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p...    28   5.8  
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ...    28   5.8  
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ...    28   5.8  
AL032639-3|CAA21635.1|  283|Caenorhabditis elegans Hypothetical ...    27   7.7  

>Z82259-8|CAC70072.3|  410|Caenorhabditis elegans Hypothetical
           protein C28D4.9 protein.
          Length = 410

 Score = 34.7 bits (76), Expect = 0.051
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 410 HHRTP*CNSLEGHWRNSIFKASTHFCIRESEC 315
           H+ T  CN  +G +R S+++  T+FCI   +C
Sbjct: 26  HYGTVACNGCKGFFRRSVWEKRTYFCIANEDC 57


>Z82259-1|CAB05126.3|  437|Caenorhabditis elegans Hypothetical
           protein C28D4.1 protein.
          Length = 437

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 410 HHRTP*CNSLEGHWRNSIFKASTHFCIRESECVRDIR 300
           H+    CN  +G +R SI++  T+ C   +EC+ + +
Sbjct: 35  HYGAMSCNGCKGFFRRSIWEKRTYKCSFNNECIIEFK 71


>AY305849-1|AAR11993.1|  437|Caenorhabditis elegans nuclear receptor
           NHR-100 protein.
          Length = 437

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 410 HHRTP*CNSLEGHWRNSIFKASTHFCIRESECVRDIR 300
           H+    CN  +G +R SI++  T+ C   +EC+ + +
Sbjct: 35  HYGAMSCNGCKGFFRRSIWEKRTYKCSFNNECIIEFK 71


>AF067219-7|AAC17026.2|  372|Caenorhabditis elegans Innexin protein
           16 protein.
          Length = 372

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/71 (23%), Positives = 34/71 (47%)
 Frame = +1

Query: 154 LPRADCFFACFPYYYFLPKSNVLSTKQKRGLYYVGEA*RIDDSEM*RWRRMSRTHSDSRM 333
           +PRA  F+  +P Y  L  +++++  ++ G    G    ++   M  WR   +    SR+
Sbjct: 119 VPRA--FWIIYPSYSGLTIADMITAARQNGKQLEGADEALEQVAMINWRTEQQKGHGSRI 176

Query: 334 QKCVEALKILL 366
             C   +K+L+
Sbjct: 177 FNCYLVMKLLI 187


>AL132860-1|CAB60513.2|  616|Caenorhabditis elegans Hypothetical
           protein Y56A3A.2 protein.
          Length = 616

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = +2

Query: 404 DGVLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELSSDTPVCTFTKPEENTHIICV 574
           D  LP+  V   +E + T+Y C H   + Q      ++  P  T   P  +   ICV
Sbjct: 433 DDALPYGGVAQPEEKKITKYSCLHARYVVQQAL--CNASEPCKTEETPAAHQEKICV 487


>AF022970-8|AAB69901.2|  231|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 118 protein.
          Length = 231

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 410 HHRTP*CNSLEGHWRNSIFKASTHFCIRESEC 315
           H+ T  CN  +G +R SI++  T+ C   ++C
Sbjct: 28  HYGTVSCNGCKGFFRRSIWEKRTYKCSFHNQC 59


>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 434 YSKEAECTRYFCAHDAVIHQS-CKDELSSDTPVCTFTKPEENTHIIC 571
           Y  + E  ++  A D ++ Q  C+DE SSD  V T  K      I C
Sbjct: 310 YKSDTETCQFTVATDDLVDQEHCEDEKSSDRMVDTVEKTMIPVQITC 356


>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 434 YSKEAECTRYFCAHDAVIHQS-CKDELSSDTPVCTFTKPEENTHIIC 571
           Y  + E  ++  A D ++ Q  C+DE SSD  V T  K      I C
Sbjct: 310 YKSDTETCQFTVATDDLVDQEHCEDEKSSDRMVDTVEKTMIPVQITC 356


>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 434 YSKEAECTRYFCAHDAVIHQS-CKDELSSDTPVCTFTKPEENTHIIC 571
           Y  + E  ++  A D ++ Q  C+DE SSD  V T  K      I C
Sbjct: 310 YKSDTETCQFTVATDDLVDQEHCEDEKSSDRMVDTVEKTMIPVQITC 356


>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 434 YSKEAECTRYFCAHDAVIHQS-CKDELSSDTPVCTFTKPEENTHIIC 571
           Y  + E  ++  A D ++ Q  C+DE SSD  V T  K      I C
Sbjct: 310 YKSDTETCQFTVATDDLVDQEHCEDEKSSDRMVDTVEKTMIPVQITC 356


>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 434 YSKEAECTRYFCAHDAVIHQS-CKDELSSDTPVCTFTKPEENTHIIC 571
           Y  + E  ++  A D ++ Q  C+DE SSD  V T  K      I C
Sbjct: 310 YKSDTETCQFTVATDDLVDQEHCEDEKSSDRMVDTVEKTMIPVQITC 356


>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 434 YSKEAECTRYFCAHDAVIHQS-CKDELSSDTPVCTFTKPEENTHIIC 571
           Y  + E  ++  A D ++ Q  C+DE SSD  V T  K      I C
Sbjct: 310 YKSDTETCQFTVATDDLVDQEHCEDEKSSDRMVDTVEKTMIPVQITC 356


>AL032639-3|CAA21635.1|  283|Caenorhabditis elegans Hypothetical
           protein Y38F1A.2 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 295 WRRMSRTHSDSRMQKCVEALKILLRQWPSRLLHQGVRWCP 414
           W+   R  + SRM +  E  +I+ ++  S  LHQ    CP
Sbjct: 67  WQSRRRQRAASRMDENAERNQIITQRRISEALHQSSHECP 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,146,336
Number of Sequences: 27780
Number of extensions: 264749
Number of successful extensions: 574
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)