Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6f18
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...   308   6e-85
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    28   1.4  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   4.2  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    26   5.5  
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    25   7.3  
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...    25   7.3  
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos...    25   7.3  
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...    25   7.3  
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   9.7  

>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score =  308 bits (755), Expect = 6e-85
 Identities = 141/191 (73%), Positives = 166/191 (86%), Gaps = 1/191 (0%)
 Frame = +1

Query: 4   KIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIETL 183
           K+AD  LA +GRKE+ +AE EMPGL+A R KYA ++ LKGARIAG LHMT+QTAVLIETL
Sbjct: 7   KVADISLAAFGRKELEIAENEMPGLIAVREKYAKSQPLKGARIAGCLHMTIQTAVLIETL 66

Query: 184 IELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTL-IFPDGKPL 360
           + LGAEV WSS NIYSTQD AAAA+ A G+P++AWKGET++EY+WCIEQ L  FP GKPL
Sbjct: 67  VALGAEVTWSSCNIYSTQDHAAAAIAATGVPVFAWKGETEEEYLWCIEQQLKSFPSGKPL 126

Query: 361 NMILDDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKMFREGLLKVPAINVNDSVT 540
           NMILDDGGDLT LVH ++P+LL D++GI+EETTTGVHNLYKMF+E  LKVPAINVNDSVT
Sbjct: 127 NMILDDGGDLTALVHERHPELLVDIRGISEETTTGVHNLYKMFKENKLKVPAINVNDSVT 186

Query: 541 KSKFDNLYGCR 573
           KSKFDNL+GC+
Sbjct: 187 KSKFDNLFGCK 197



 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 20/23 (86%), Positives = 22/23 (95%)
 Frame = +2

Query: 575 ESLLDGIKRATDIMIAGKVCVVA 643
           ESL+DGIKRATD+MIAGKV VVA
Sbjct: 198 ESLVDGIKRATDVMIAGKVAVVA 220


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 24/83 (28%), Positives = 40/83 (48%)
 Frame = -1

Query: 578 TPLHPYKLSNLLFVTESLTLIAGTFKSPSRNILYKLCTPVVVSSVIPFTSFKRSGYLVWT 399
           TP +P   S++   T SL L  G     SR+   K   PV+ +S +   +  +S  L  +
Sbjct: 530 TPAYPSYPSHIPLGTASLPL-KGNLYQISRSDDIKSGAPVLDTSSLVNPTLAKSASLNNS 588

Query: 398 KFVKSPPSSKIILRGFPSGKINV 330
             +   PSS ++ R  P+GK+ +
Sbjct: 589 SLLN--PSSSLLRREVPAGKLTM 609


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -1

Query: 491 RNILYKLCTPVVVSSVIPFTSFKRSGYLVWTKFVKSPPSSKIILRGF 351
           RN+L++ CT   +     +  F++ G L + K VK P + + + RGF
Sbjct: 282 RNLLFE-CTEQEL-----YNHFRQFGPLAYAKLVKDPATDRSLGRGF 322


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +3

Query: 42  RNYVSRERNARPYGMSSEICSS*NTQRCQNSRQLTHDSTNSGSY*DFNRIGSRGTMVQQ* 221
           R+Y    R ++PY  S    SS        S  ++  STNS      N   SR T + + 
Sbjct: 90  RSYSGNPRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSVATSLNYQSSRETGISKD 149

Query: 222 H 224
           H
Sbjct: 150 H 150


>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 385 DLTNLVHTKYPDLLKDVKG 441
           D  N + TK+P ++KDV+G
Sbjct: 376 DRLNKLQTKFPHVMKDVRG 394


>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +1

Query: 352 KPLNMILDDGGDLTNLVHTKYPDLLK-DVKGI--TEETTTGVHNLYKMFRE 495
           K +N +    G++  +     P  LK  V GI    ++ +G HN+YK FR+
Sbjct: 45  KMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRD 95


>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 196

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 92  RRHAIRPGISFSANIISFRPHSANFSS 12
           R  A++PG +   +I  +RP   NF+S
Sbjct: 31  RERAVKPGYTAPEDIKRYRPGRGNFAS 57


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +1

Query: 352 KPLNMILDDGGDLTNLVHTKYPDLLK-DVKGI--TEETTTGVHNLYKMFRE 495
           K +N +    G++  +     P  LK  V GI    ++ +G HN+YK FR+
Sbjct: 45  KMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRD 95


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 533 ESLTLIAGTFKSPSRNILYKLCTPVVVSSV-IPFTSFKRSG 414
           E  TLI   F SPS ++     TP V+ S+   F + +R+G
Sbjct: 350 EPNTLIFQNFSSPSTSLSAPKDTPAVIQSINTSFLNNERAG 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,762
Number of Sequences: 5004
Number of extensions: 61227
Number of successful extensions: 170
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)