Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6f14
(570 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical pr... 42 4e-04
AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like fact... 42 4e-04
AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like fact... 42 4e-04
U52003-5|AAG00057.1| 730|Caenorhabditis elegans P granule abnor... 28 5.4
U52003-4|ABB51171.1| 771|Caenorhabditis elegans P granule abnor... 28 5.4
AF077868-1|AAC36100.1| 730|Caenorhabditis elegans PGL-1 protein. 28 5.4
Z34533-9|CAA84303.2| 368|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z30973-5|CAA83224.2| 368|Caenorhabditis elegans Hypothetical pr... 27 7.2
U67949-5|AAB07566.1| 705|Caenorhabditis elegans Hypothetical pr... 27 7.2
U29379-4|AAF99980.2| 415|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z73104-2|CAA97434.1| 479|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z69717-3|CAA93534.1| 617|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z34799-2|CAA84318.1| 692|Caenorhabditis elegans Hypothetical pr... 27 9.5
AL009170-1|CAA15637.1| 617|Caenorhabditis elegans Hypothetical ... 27 9.5
>Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical
protein F39H11.2 protein.
Length = 505
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Frame = +1
Query: 421 ITELAPTQPAVDEEEETPE---IDIMINNVVCSFSVKCHLNLRQIALNGVNV 567
+ ++ P + EE P+ IDI I NVVC++++ H++LR++A+N NV
Sbjct: 241 VPDVPPEGTSAANEEPMPDDGDIDIQIRNVVCNYTLPLHIDLRKLAMNTHNV 292
>AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like factor
protein.
Length = 454
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Frame = +1
Query: 421 ITELAPTQPAVDEEEETPE---IDIMINNVVCSFSVKCHLNLRQIALNGVNV 567
+ ++ P + EE P+ IDI I NVVC++++ H++LR++A+N NV
Sbjct: 241 VPDVPPEGTSAANEEPMPDDGDIDIQIRNVVCNYTLPLHIDLRKLAMNTHNV 292
>AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like factor
protein.
Length = 505
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Frame = +1
Query: 421 ITELAPTQPAVDEEEETPE---IDIMINNVVCSFSVKCHLNLRQIALNGVNV 567
+ ++ P + EE P+ IDI I NVVC++++ H++LR++A+N NV
Sbjct: 241 VPDVPPEGTSAANEEPMPDDGDIDIQIRNVVCNYTLPLHIDLRKLAMNTHNV 292
>U52003-5|AAG00057.1| 730|Caenorhabditis elegans P granule
abnormality protein 1,isoform a protein.
Length = 730
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 460 EEETPEIDIMINNVVCSFSVKCHLNLRQIALNGVNVE 570
EE + E+DI+ +NVV +F C L+Q+ L+G E
Sbjct: 180 EETSDEVDIIRDNVVNAFD-SCKPLLKQLMLDGPKSE 215
>U52003-4|ABB51171.1| 771|Caenorhabditis elegans P granule
abnormality protein 1,isoform b protein.
Length = 771
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 460 EEETPEIDIMINNVVCSFSVKCHLNLRQIALNGVNVE 570
EE + E+DI+ +NVV +F C L+Q+ L+G E
Sbjct: 221 EETSDEVDIIRDNVVNAFD-SCKPLLKQLMLDGPKSE 256
>AF077868-1|AAC36100.1| 730|Caenorhabditis elegans PGL-1 protein.
Length = 730
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 460 EEETPEIDIMINNVVCSFSVKCHLNLRQIALNGVNVE 570
EE + E+DI+ +NVV +F C L+Q+ L+G E
Sbjct: 180 EETSDEVDIIRDNVVNAFD-SCKPLLKQLMLDGPKSE 215
>Z34533-9|CAA84303.2| 368|Caenorhabditis elegans Hypothetical
protein B0285.10 protein.
Length = 368
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -2
Query: 149 NFFVSILNDHTTSVNIKETSYLQLFTEKNQKLFHILSSTA 30
+F + L D +VN E + ++ ++ +FH+ SST+
Sbjct: 24 DFGIDFLGDEWKNVNRSEVTVTRILGGQSNHMFHVTSSTS 63
>Z30973-5|CAA83224.2| 368|Caenorhabditis elegans Hypothetical
protein B0285.10 protein.
Length = 368
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -2
Query: 149 NFFVSILNDHTTSVNIKETSYLQLFTEKNQKLFHILSSTA 30
+F + L D +VN E + ++ ++ +FH+ SST+
Sbjct: 24 DFGIDFLGDEWKNVNRSEVTVTRILGGQSNHMFHVTSSTS 63
>U67949-5|AAB07566.1| 705|Caenorhabditis elegans Hypothetical
protein F55A4.5 protein.
Length = 705
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 220 EKYISLYQHSVVVMATLIQENGIKELSKGTHGVVANHGISTH 345
+K LY H + ++ LIQ K T +VA HG+S +
Sbjct: 402 KKMDPLYGHQINPVSRLIQVTQAKSKEHPTFELVAEHGVSKY 443
>U29379-4|AAF99980.2| 415|Caenorhabditis elegans Hypothetical
protein K05B2.4 protein.
Length = 415
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = +1
Query: 301 KGTHGVVANHGISTHSVPTHMVPDHEYCETTAQTPSQRQAITELAPTQPAVDEEEETPE 477
+GT+ V G+ PT V YC T + Q + + P ++ EE PE
Sbjct: 67 RGTYSGVNESGLFESLEPTDTVRYGGYCNCTPPVDFKYQLLRLMHPLVERIEVEEAYPE 125
>Z73104-2|CAA97434.1| 479|Caenorhabditis elegans Hypothetical
protein K08D8.3 protein.
Length = 479
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 143 FVSILNDHTTSVNIKETSYLQLFTEKNQKLFHILSSTAMF 24
F N H T+ N + T L FT +NQ + +L +A++
Sbjct: 151 FAMAPNTHLTTFNAETTVGLVAFTLRNQSHYPLLRQSAVY 190
>Z69717-3|CAA93534.1| 617|Caenorhabditis elegans Hypothetical
protein H19J13.1 protein.
Length = 617
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 170 LFCNENYNFVSSVKIIVRNISVYISTPWWSWRR 268
+FCN SS KI+ + IS W+W R
Sbjct: 209 IFCNSKITVNSSRKIVAFGMMHLISVNLWTWFR 241
>Z34799-2|CAA84318.1| 692|Caenorhabditis elegans Hypothetical
protein F34D10.4 protein.
Length = 692
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 328 HGISTHSVPTHMVPDHEYCETTAQTPSQRQAITELAPTQPAVDEEEETP 474
HG S T + D+E E T P Q+++ T LAPT P + P
Sbjct: 128 HG-KQQSFGTPLYNDNEE-EQTRHQPQQQRSSTPLAPTTPTPPPPTQAP 174
>AL009170-1|CAA15637.1| 617|Caenorhabditis elegans Hypothetical
protein H19J13.1 protein.
Length = 617
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 170 LFCNENYNFVSSVKIIVRNISVYISTPWWSWRR 268
+FCN SS KI+ + IS W+W R
Sbjct: 209 IFCNSKITVNSSRKIVAFGMMHLISVNLWTWFR 241
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,852,641
Number of Sequences: 27780
Number of extensions: 265282
Number of successful extensions: 809
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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