Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6f11
(616 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 28 1.2
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 1.6
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 2.2
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 27 2.2
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo... 26 5.0
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.6
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 6.6
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 25 8.7
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 25 8.7
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 410 HNVKKVNDAFVSSGDFQQLPVNSSKNEPMIT--LPSPKLDNVWAAINV 547
H +KK+ND G QLP+ NE +T + PK + + A N+
Sbjct: 112 HELKKLNDDHTVHGVLVQLPLPKHLNERTVTESITPPKDVDGFGAFNI 159
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.5 bits (58), Expect = 1.6
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +2
Query: 119 NSFELIIAQKKTVTLSKLIFELCKACELKKMSCIPPSAFTAGRIRETQRENRDLKMPNVD 298
N E I+A + T L+F + C L+K++ + F ++R++ +EN DLK ++
Sbjct: 457 NLVERIVALEDFSTSRSLLFAIL-LCLLRKLTSLN---FEFMKLRDSLQENADLKQIKIE 512
Query: 299 MGK 307
K
Sbjct: 513 ENK 515
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/63 (23%), Positives = 30/63 (47%)
Frame = +2
Query: 110 EDSNSFELIIAQKKTVTLSKLIFELCKACELKKMSCIPPSAFTAGRIRETQRENRDLKMP 289
E+S+ L++ K +TL+KLI +K + + P T + E + + L+
Sbjct: 1172 ENSDEIILVLILTKNITLAKLITSRMSVDFSEKYTQLIPVITTYTHLSEVENKKYSLRFN 1231
Query: 290 NVD 298
++D
Sbjct: 1232 SID 1234
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 613 FFKNVILFHIKKEKTKLSMRLRYIDCGPN 527
FFKN++ H EK K S+ L + GP+
Sbjct: 594 FFKNILPLHFGLEKDKFSIFLDQVFRGPD 622
>SPAC12B10.07 |acp1||F-actin capping protein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 256
Score = 25.8 bits (54), Expect = 5.0
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +2
Query: 248 IRETQRENRDLKMPNVDMG--KKPDKYFSFTNVELPVKYNSK-FMNSIW 385
+++ ++ D + +V G KK D+ SFT V + KYN K + N W
Sbjct: 107 VKQIKKVASDHYLSDVTFGIIKKSDEVESFTIVLVSSKYNPKNYWNGSW 155
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 209 MSCIPPSAFTAGRI-RETQRENRDLKMPNVDMGK 307
M C+PPS T G +E + E ++++ +++ G+
Sbjct: 358 MQCLPPSYETMGPCEKEMKEETNEVEIASIESGE 391
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.4 bits (53), Expect = 6.6
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -2
Query: 189 LHSSKINLLSVTVFFCAMMSSKLLESSQTLRYVQRNFLGFSSTMNYTDQ 43
LH+SK++ LS T + ++ L E+++ L +R F F S + DQ
Sbjct: 1415 LHNSKVSKLSFTKSNKSTLNPNLKETAEEL---ERKFREFCSNKDELDQ 1460
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 398 RYSPHNVKKVNDAFVSSGDFQQLPVNSSKNEPMITLPS 511
R S N KK +D S+GD V+S + ++ LPS
Sbjct: 417 RSSSENNKKEDDLKDSTGDLNTTQVSSRVDNFLLKLPS 454
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 25.0 bits (52), Expect = 8.7
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = +2
Query: 392 YNRYSPHNVKKVNDAFVSSGDFQQLPVNSSKN----EPMITLPSPKLDNVW 532
+N S +VKK + + S QL NS + +T+P K+D VW
Sbjct: 530 HNSPSLLSVKKRQNNHIRSNTLIQLNSNSKDSTIFPRRSVTVPGDKIDTVW 580
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,075
Number of Sequences: 5004
Number of extensions: 55605
Number of successful extensions: 140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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