Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6f07
         (654 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6EIR8 Cluster: Putative uncharacterized protein; n=1; ...    33   4.5  
UniRef50_Q94GK6 Cluster: Putative gag-pol polyprotein; n=1; Oryz...    33   4.5  
UniRef50_P46578 Cluster: Uncharacterized protein gop-1; n=3; Cae...    33   7.9  

>UniRef50_A6EIR8 Cluster: Putative uncharacterized protein; n=1;
           Pedobacter sp. BAL39|Rep: Putative uncharacterized
           protein - Pedobacter sp. BAL39
          Length = 1473

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 22/80 (27%), Positives = 38/80 (47%)
 Frame = -1

Query: 387 INSFHTYLKNLTTTYIPPLLHNPSQFNQQLFIQPFKLNTIFNVATFNPFLLLQLQFDQKC 208
           +N+  +Y K L   YIP L  +  ++  Q+F   F L TI       P L+  L+ D++ 
Sbjct: 595 LNTLPSYYKALAKQYIPSLKTDIFKYKDQIF--QFNL-TIKKFEPIAPLLVPGLEIDEQA 651

Query: 207 TFIQPYNHSTLTSLLTHYIK 148
            FI  ++     + L  ++K
Sbjct: 652 IFIGNFDSPNNIATLNGFVK 671


>UniRef50_Q94GK6 Cluster: Putative gag-pol polyprotein; n=1; Oryza
           sativa (japonica cultivar-group)|Rep: Putative gag-pol
           polyprotein - Oryza sativa subsp. japonica (Rice)
          Length = 922

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = -1

Query: 510 QVLPAITFNIQTPTHPLNTCTHFSPSII*YQKRI--TLT*PS*INSFHTYLKNLTTTYIP 337
           QVL  I+  +QT +H ++ C H+S       K I   L  P  IN+ H  L N     + 
Sbjct: 558 QVLGDISKGVQTRSHVVSICEHYSFVFCFEPKHIDEALYDPDWINAMHEELSNFVRNKVW 617

Query: 336 PLLHNPSQFN 307
            L+  P   N
Sbjct: 618 TLVERPRDHN 627


>UniRef50_P46578 Cluster: Uncharacterized protein gop-1; n=3;
           Caenorhabditis|Rep: Uncharacterized protein gop-1 -
           Caenorhabditis elegans
          Length = 892

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = -1

Query: 357 LTTTYIPPLLHN---PSQFNQQLFIQPFKLNTIFNVATFNPFLLLQLQFDQKCTFIQPYN 187
           +TT Y+ PLL +   P + N  L + P  ++ +F    F+ FLL+    +   TF+  + 
Sbjct: 275 VTTRYLSPLLLSSISPRRDNHSLLLTP--ISALF---FFSEFLLIVRHHETIYTFLSSFL 329

Query: 186 HSTLTSLLTHYIK 148
             T  +L TH+I+
Sbjct: 330 FDTQNTLTTHWIR 342


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 540,787,685
Number of Sequences: 1657284
Number of extensions: 9981772
Number of successful extensions: 19584
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19576
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)