Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6f07
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    28   1.0  
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ...    28   1.4  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    27   2.4  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   7.2  

>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1018

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
 Frame = -1

Query: 387  INSFHTYLKNLTT-------TYIPPLLHNPSQFNQQLFIQPFKLNTIFNVATFNPFLLLQ 229
            +N  HT +K LT+       T IP LL  P   N    ++   L  + ++  F P   LQ
Sbjct: 925  LNVIHTSVKELTSLLTEYLDTLIPSLLAIPKDMNNPTVVRLLALKCLGSLPEFTPTTNLQ 984

Query: 228  LQFDQ 214
            L  D+
Sbjct: 985  LFRDK 989


>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 8/23 (34%), Positives = 20/23 (86%)
 Frame = -1

Query: 375 HTYLKNLTTTYIPPLLHNPSQFN 307
           +TY+++L++TYIPP+ ++  +++
Sbjct: 110 YTYIESLSSTYIPPVQYSLGEYD 132


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 484 YTNSNTPPQHLHTFFSVYNLIPKKNNANLTFIN*FFPYI 368
           YT ++  PQ   T+ SVY  +P+K  AN   +  +F YI
Sbjct: 153 YTMNDLFPQSFPTWISVYRNVPEKAWAN-RCVEWYFRYI 190


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 433 RRRKMCASVEGVCWSLY 483
           R  ++C+S++ +CW LY
Sbjct: 231 RLYRLCSSLKRICWELY 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,380,063
Number of Sequences: 5004
Number of extensions: 46513
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)