Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6e23
         (168 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy...    27   0.33 
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   1.0  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   1.8  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    23   4.1  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    23   7.1  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    22   9.4  
SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr 3|||M...    22   9.4  
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    22   9.4  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    22   9.4  

>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 166

 Score = 27.1 bits (57), Expect = 0.33
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 1   RSESTSNLIENEENNFLGFDNPNILKLTKMKWLSENNDE 117
           ++E T NLI N +   L FDN  + +L   K L    +E
Sbjct: 56  QTEHTQNLILNSDWKGLSFDNEELERLQHQKMLQIQAEE 94


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 4   SESTSNLIENEENNFLGFDNPNILKLTKMKWL 99
           SE   + I    + +LG D P I  LT++K L
Sbjct: 81  SEENEDSISEHFDEYLGADKPGISFLTRLKTL 112


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/18 (66%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
 Frame = +1

Query: 1   RSESTSNLIENEE-NNFL 51
           RSE+ S +IEN+E NNFL
Sbjct: 383 RSETNSPIIENKEANNFL 400


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 4   SESTSNLIENEENNFLGFDNPNILK 78
           S+  S  +ENE+ + LGF   + LK
Sbjct: 651 SKKISKDVENEKGSILGFSRKSSLK 675


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 40  NNFLGFDNPNILKLTKMKWLS 102
           +NF+    P ILK T++++L+
Sbjct: 61  HNFIKSIGPEILKFTRLRYLN 81


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/37 (21%), Positives = 21/37 (56%)
 Frame = +1

Query: 13  TSNLIENEENNFLGFDNPNILKLTKMKWLSENNDEAL 123
           T ++ +   ++ + F+N + +K+   +W+   + EAL
Sbjct: 125 TLSVSDGTHSHAINFNNMSTMKIVLERWIVNLDGEAL 161


>SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 201

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 40  NNFLGFDNPNILKLTKMKWLSENNDE 117
           N F+  D PN+ K T+    +E  DE
Sbjct: 146 NTFVNPDRPNLKKRTEEDEENEEEDE 171


>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 22  LIENEENNFLGFDNP 66
           ++ NE+ NFL FD P
Sbjct: 186 ILRNEKKNFLLFDMP 200


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 46  FLGFDNPNILKLTKMKWLSENNDEALD 126
           F  + +PN L  TK+ +LS +N +  D
Sbjct: 192 FFTWKDPNSLSPTKLSFLSTSNIDPED 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.306    0.125    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 541,331
Number of Sequences: 5004
Number of extensions: 6549
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 36
effective length of database: 2,182,334
effective search space used: 41464346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)