Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6e23
         (168 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   0.45 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   2.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    19   4.2  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          19   4.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   7.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    18   9.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 0.45
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 19  NLIENEENNFLGFDNPNILKLTKMKWLSENND 114
           N+I +   N++G ++  I ++  + W S N D
Sbjct: 788 NIITHMILNYVGSEDSVIPRILYLTWYSSNGD 819


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 49  LGFDNPNILKLTKMKWLSENNDEAL 123
           LG+    I ++ K KW    N E L
Sbjct: 610 LGYQKGGISEIQKHKWFDGFNWEGL 634


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +2

Query: 131 ALLPHHLHRVPV 166
           A  PHH H  P+
Sbjct: 437 AATPHHQHSTPL 448


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 16 SNLIENEENNFLGFDNPN 69
          SN+ E EEN     D+P+
Sbjct: 7  SNMTEFEENVSFDIDDPD 24


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 82  TKMKWLSENNDE 117
           T  KWLSE  ++
Sbjct: 29  TSCKWLSEGGND 40


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -1

Query: 75  KYIWVVKTK 49
           +YIW+V  K
Sbjct: 371 EYIWIVSNK 379


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.306    0.125    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,888
Number of Sequences: 438
Number of extensions: 395
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 35
effective length of database: 131,013
effective search space used:  2620260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.4 bits)