Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6e22
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0201 + 41956938-41957022,41957123-41957214,41957460-419575...    29   2.4  
12_01_0987 - 10016203-10017165,10017346-10018180,10019532-10020379     29   3.2  
04_04_0171 - 23282840-23283036,23283360-23283660,23283747-232840...    28   5.6  
11_06_0477 + 24057677-24059099,24059556-24060448,24060456-240605...    27   9.9  
01_06_0244 - 27837591-27838133                                         27   9.9  

>01_07_0201 +
           41956938-41957022,41957123-41957214,41957460-41957561,
           41957691-41957763,41958297-41958403,41958476-41958599,
           41959004-41959198,41959515-41959600,41959695-41959802,
           41960171-41960266,41960347-41960445,41960562-41960636,
           41961040-41961171,41961252-41961367,41961935-41962109
          Length = 554

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 380 LPNINWNEYGIDVTDTIGAS 439
           LP+ +WNE+G D+TD + A+
Sbjct: 526 LPSTSWNEFGSDITDHVLAT 545


>12_01_0987 - 10016203-10017165,10017346-10018180,10019532-10020379
          Length = 881

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 24/93 (25%), Positives = 42/93 (45%)
 Frame = +2

Query: 215 LLKYIVKLEAQKTQALKDIETLAESQNKALDDPLTFIDDLRSGNIQFPAHQTISDLPNIN 394
           L + +V  + Q    + D+++L    +  L  PL  ++DLR              L  + 
Sbjct: 595 LARLLVGNKVQLPDGIGDLQSLQVLSSARLYKPLKLVEDLRR-------------LTKLR 641

Query: 395 WNEYGIDVTDTIGASESKQCKEELDSSFKVRGR 493
             E  +  +DT+GA E  + +E L+SS  V G+
Sbjct: 642 TLEIVLHGSDTLGAHEMGRYEEALESSLTVLGK 674


>04_04_0171 -
           23282840-23283036,23283360-23283660,23283747-23284070,
           23284678-23284698,23284877-23285788
          Length = 584

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 458 EELDSSFKVRGRKFTDNKPETFNQL 532
           +ELD+    RGR F D + +T NQL
Sbjct: 396 DELDAVGGSRGRSFNDERDQTLNQL 420


>11_06_0477 +
           24057677-24059099,24059556-24060448,24060456-24060578,
           24060995-24061036
          Length = 826

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 394 VYIGQIRDSLMSRKLNVSGSEIINKRQRVIQGFI 293
           V +GQIRD+    +  +  SE + KR ++ +GF+
Sbjct: 61  VLVGQIRDAAYDAENVIEASEYMVKRNKLKKGFM 94


>01_06_0244 - 27837591-27838133
          Length = 180

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 468 SNSSLHCFDSLAPIVSVTSIPYSFQFI 388
           S S L CF   AP++  T +PY  Q +
Sbjct: 16  SGSHLRCFCPPAPVMEHTGVPYDSQVV 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,830,074
Number of Sequences: 37544
Number of extensions: 189573
Number of successful extensions: 402
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)