Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6e21
(606 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 29 0.53
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p... 27 2.1
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 27 2.8
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 26 3.7
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 3.7
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 6.5
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.5
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 6.5
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 25 6.5
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 25 6.5
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 25 8.6
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc... 25 8.6
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 25 8.6
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 25 8.6
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 29.1 bits (62), Expect = 0.53
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 95 RLTRSIFCYNMDTYRKIWPELATLTRHNLFPKRS 196
R RS+FC MD+ +K+ L T T + + P +S
Sbjct: 174 RCYRSLFCKKMDSLKKLVSFLLTETENAILPPKS 207
>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 612
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 360 HLQTPEWFKYNEQGSHRKASREWFGG 437
HL + KYN +HR AS W+ G
Sbjct: 141 HLSSSSLSKYNHHSNHRLASPGWWYG 166
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 145 LAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDEPTKQLFKRKRC 279
LA VGY + ++E VK Q L +PT +L K+K C
Sbjct: 765 LASVGYLEKAIDLAEKVKDFQTMVILLDCLDPKDPTIKLQKQKAC 809
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +1
Query: 130 YLSKDLAGVGYT---YTSQSISEAVKKMQAFAGLPQTGVLDEPT 252
YL KD+ T Y + S +A K A AGL V++EPT
Sbjct: 178 YLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLRVVNEPT 221
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 26.2 bits (55), Expect = 3.7
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 122 NMDTYRKIWPELATL 166
N+DT R++WPEL +
Sbjct: 469 NLDTIRRLWPELGRM 483
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +2
Query: 209 PSQGYHKQEYWMNQLSSYSKEKDAV*KI*MKTRTQEIADTLYKKDGINA--RSLTDS*MV 382
PS Y K YW+ L + + KI ++ E+ TLY +N+ R+L + ++
Sbjct: 1469 PSTDYTKSVYWLLTLLHAGLQTNQDLKIYLRRHVFEMICTLYNSCVVNSEIRTLIEKILL 1528
Query: 383 QV 388
+V
Sbjct: 1529 KV 1530
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.4 bits (53), Expect = 6.5
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = -2
Query: 362 VTSRLFHPSCIMYLRFLACESSSISFKPHLFLLNNCLVGSSS-TPVCGSPAKACIF---L 195
+T++ FH CI+ L+ S+ KP +F + + T +C SPA+ C+F L
Sbjct: 412 ITAKSFH-KCILLLK---TGFSAPLIKPSVFSGSKWVENMRLLTDLCKSPAQKCLFSNLL 467
Query: 194 TASEIDC 174
TA+ C
Sbjct: 468 TATRKFC 474
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 241 DEPTKQLFKRKRCGLKDIDEDSHARNRRYIIQ 336
D P ++F+R R LK + ++ N++Y++Q
Sbjct: 2335 DSPFLEIFRRMRKTLKKQTIEEYSINKKYLMQ 2366
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 343 WNKREVTYR-LLNGSSTMSKDRIERLLENGLEVW 441
W E+ R ++ SST + +E+ NGLE W
Sbjct: 491 WIFEEIEARQFIDKSSTQRLEMLEQYCNNGLEYW 524
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 25.4 bits (53), Expect = 6.5
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 376 NGSSTMSKDRIERLLENGLE-VWAPHGNLHFTKLDEGKADIQVYFASGNHGDGFPFDGPG 552
NG+ST E L + G+ V+ P G H K + + DI VYF + HG D
Sbjct: 322 NGAST------EYLQDLGITTVFTPTGVKHLHKAAK-EFDIGVYFEANGHGTVLFSDKAL 374
Query: 553 RVVAHAFPPP 582
+AH F P
Sbjct: 375 ANLAHPFFTP 384
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 376 NGSSTMSKDRIERLLENGLE 435
N S +++ DRI R +EN L+
Sbjct: 38 NSSKSLNNDRISRTIENSLQ 57
>SPAC12G12.10 |||WD repeat protein, human WDR21
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 420
Score = 25.0 bits (52), Expect = 8.6
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Frame = +1
Query: 313 RNRRYIIQEGWNKREVTYRLLNGSSTMSKDRIE----RLLENGLEVWAPHGNLHFTKLDE 480
RN+ ++ + K+E R +GSS S ++ +LL +GLE + F + +
Sbjct: 272 RNKSVLVYDLRTKKECVQRFYHGSSICSMQNLDFSQPKLLVSGLESKISLYDCRFLQSKK 331
Query: 481 GKADIQVYFASGN 519
I Y N
Sbjct: 332 RPQSIMSYMGHSN 344
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 149 PELATLTRHNLFPKRSRKCRPSQGYHKQEYWMNQLSSYSKE 271
P TL LF R+ S KQE+W + +S K+
Sbjct: 663 PNYKTLINTCLFEAYIRESFASSNVEKQEFWQEKSNSLLKK 703
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = -3
Query: 445 APKPPNHSLEAFLCDPCS-LYLNHSGVCK*PRVY 347
A K PN F CD C +++ SG+ R Y
Sbjct: 128 ASKQPNMPNATFRCDKCDMMFVKQSGLTNHKRTY 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,932
Number of Sequences: 5004
Number of extensions: 65410
Number of successful extensions: 224
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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