Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6e21
(606 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0697 - 30999644-31000762 71 9e-13
06_01_0940 + 7235801-7236916 66 2e-11
10_08_0900 - 21436508-21437521 66 2e-11
10_08_0901 - 21443224-21444085,21444804-21444998,21445189-214452... 49 3e-06
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 32 0.41
10_08_0164 - 15347180-15347446 29 2.2
12_02_0931 + 24512496-24512567,24512705-24512806,24512939-245129... 29 3.8
10_08_0731 + 20161962-20163628,20163721-20163862,20164181-201644... 29 3.8
05_07_0247 + 28643862-28644310,28645151-28645207,28645644-286489... 29 3.8
04_04_1242 - 32016553-32016857,32017628-32017784,32017871-320180... 29 3.8
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 29 3.8
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 28 5.0
07_03_1242 + 25113464-25114150 28 6.6
10_01_0132 - 1601421-1601657,1601761-1601922,1602812-1603721,160... 27 8.7
03_02_0018 - 5016752-5017288 27 8.7
02_05_0226 + 26971851-26972034,26972734-26972834,26972876-269729... 27 8.7
>02_05_0697 - 30999644-31000762
Length = 372
Score = 70.5 bits (165), Expect = 9e-13
Identities = 58/184 (31%), Positives = 81/184 (44%), Gaps = 19/184 (10%)
Frame = +1
Query: 109 NFLLQYGYLSKDLAGVGYTYT-SQSISEAVKKMQAFAGLPQTGVLDEPTKQLFKRKRCGL 285
++L +GYL + Y+ S+ A+ Q GL TG LD T RCG+
Sbjct: 67 DYLSHFGYLPPPPSSSPYSDAFDDSLEAAIAAYQRNFGLNATGELDTDTVDQMVAPRCGV 126
Query: 286 KDI-------DEDSHA---RNRR-YIIQEG---WN--KREVTYRLLNGSST-MSKDRIER 414
D+ D +S A R R Y G W +R + Y + S+T + + +
Sbjct: 127 ADVINGTSTMDRNSSAAALRGRHLYSYFPGGPMWPPFRRNLRYAITATSATSIDRATLSA 186
Query: 415 LLENGLEVWAPHGNLHFTKLDEGK-ADIQVYFASGNHGDGFPFDGPGRVVAHAFPPPLGD 591
+ WA L FT++ ADI + F SG+HGDG FDGP +AHAF P G
Sbjct: 187 VFARAFSRWAAATRLQFTEVSSASNADITIGFYSGDHGDGEAFDGPLGTLAHAFSPTDGR 246
Query: 592 IHFD 603
H D
Sbjct: 247 FHLD 250
>06_01_0940 + 7235801-7236916
Length = 371
Score = 66.5 bits (155), Expect = 2e-11
Identities = 56/184 (30%), Positives = 79/184 (42%), Gaps = 19/184 (10%)
Frame = +1
Query: 109 NFLLQYGYLS----KDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDEPTKQLFKRKR 276
++L +GYLS L+ + A+K Q GL TG LD T R
Sbjct: 67 DYLWHFGYLSYPSSSSLSPSFNDLFDADMELAIKMYQGNFGLDVTGDLDAATVSQMMAPR 126
Query: 277 CGLKDIDEDSHA-------RNRR-YIIQEG---WNKREVTYRL-LNGSSTMSKDR--IER 414
CG+ D+ + R R Y G W + T R + +S S DR + +
Sbjct: 127 CGVADVVNGTSTMGGGGGVRGRGLYSYFPGSPRWPRSRTTLRYAITATSQTSIDRATLSK 186
Query: 415 LLENGLEVWAPHGNLHFTKL-DEGKADIQVYFASGNHGDGFPFDGPGRVVAHAFPPPLGD 591
+ + W+ L+FT+ ADI + F G+HGDG FDGP +AHAF P G
Sbjct: 187 VFASAFARWSAATTLNFTEAASAADADITIGFYGGDHGDGEAFDGPLGTLAHAFSPTNGR 246
Query: 592 IHFD 603
+H D
Sbjct: 247 LHLD 250
>10_08_0900 - 21436508-21437521
Length = 337
Score = 66.1 bits (154), Expect = 2e-11
Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 21/185 (11%)
Frame = +1
Query: 112 FLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDEPTKQLFKRKRCGLKD 291
+L ++GY++K + + + AV++ Q LP TG LD T RCG+ D
Sbjct: 42 YLARFGYMAKPGRDTTDAF-DEHLEVAVRRYQTRFSLPVTGRLDNATLDQIMSPRCGVGD 100
Query: 292 IDED---SHARN--------RRYIIQEG---WNKRE----VTYRLLNGSST--MSKDRIE 411
D + S A + R+ +G W + + ++Y + ++ + +
Sbjct: 101 DDVERPVSVALSPGAQGGVVSRFTFFKGEPRWTRSDPPIVLSYAVSPTATVGYLPPAAVR 160
Query: 412 RLLENGLEVWAPHGNLHFTKLDEGKA-DIQVYFASGNHGDGFPFDGPGRVVAHAFPPPLG 588
+ + WA + F + D+ +A DI+V F +GNHGDG PFDGP ++ HAF P G
Sbjct: 161 AVFQRAFARWARTIPVGFVETDDYEAADIKVGFYAGNHGDGVPFDGPLGILGHAFSPKNG 220
Query: 589 DIHFD 603
+H D
Sbjct: 221 RLHLD 225
>10_08_0901 -
21443224-21444085,21444804-21444998,21445189-21445259,
21446293-21447094,21447687-21447723,21448270-21449023
Length = 906
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/41 (56%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +1
Query: 484 KADIQV-YFASGNHGDGFPFDGPGRVVAHAFPPPLGDIHFD 603
+ADI+V ++ +G HGDG PFDGP V AHA P G I FD
Sbjct: 116 EADIRVGFYGAGEHGDGHPFDGPLNVYAHATGPEDGRIDFD 156
Score = 27.5 bits (58), Expect = 8.7
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Frame = +1
Query: 343 WNKREV--TYRL--LNGSSTMSKDRIERLLENGLEVWAPHGNLHFTKLDE-GKADIQVYF 507
WN+ ++ TY + L + + +D + + L WA L F + +ADI+V F
Sbjct: 679 WNRPDMRLTYAVSPLATADHLPRDAVREAFRSALARWAEVTPLRFAEAARYEEADIRVGF 738
Query: 508 ----ASGN-HGDGFPFDGPGR-VVAHAFPPPLGDIH 597
A G G G G +AHA PP G IH
Sbjct: 739 YLHTADGKCDACGCVCKGGGEEALAHAHPPQDGRIH 774
>02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 31.9 bits (69), Expect = 0.41
Identities = 32/126 (25%), Positives = 56/126 (44%)
Frame = +1
Query: 97 LDEVNFLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDEPTKQLFKRKR 276
L + L+ + + +A VG + S+ E +QA AG G L +L +
Sbjct: 870 LINLRHLIDHEEVHSAIASVG---SLTSLQELTFNVQA-AGNFSIGQLSS-MNELVTLRI 924
Query: 277 CGLKDIDEDSHARNRRYIIQEGWNKREVTYRLLNGSSTMSKDRIERLLENGLEVWAPHGN 456
C L+++ + A++ R+I +E T+ N S S+ E+ ++ LE PH N
Sbjct: 925 CQLENVKSEEEAKSARFIDKEHLEALSFTW---NDLSMTSEPTAEKTTDDVLEGLEPHHN 981
Query: 457 LHFTKL 474
L +L
Sbjct: 982 LKHLQL 987
>10_08_0164 - 15347180-15347446
Length = 88
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 507 RFRQPWRRVPLRWPWSSSGSRV 572
R++QPW PL + W S SRV
Sbjct: 18 RWQQPWHMSPLGFDWRGSSSRV 39
>12_02_0931 +
24512496-24512567,24512705-24512806,24512939-24512984,
24513292-24513355,24513997-24514348,24514497-24514749,
24515069-24515311,24515399-24515518,24515710-24516158
Length = 566
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 307 HARNR--RYIIQEGWNKREVTYRLLNGSSTMSKDRIERLLENGLEVWAPHGNLHF 465
H RN + +++EG N + S KD IE LENG+ W + +H+
Sbjct: 107 HGRNLFLQSLVEEGQNPSTSNGGSNSQKSVEYKDLIE-CLENGINFWTDYSKVHY 160
>10_08_0731 +
20161962-20163628,20163721-20163862,20164181-20164490,
20164566-20166466,20166557-20166650,20166953-20167440,
20167919-20168599,20168870-20168944,20170148-20170210,
20170588-20170633,20171373-20171420,20171484-20171557
Length = 1862
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -1
Query: 99 KRRGV*LQINGSTLHQTDAQNLKYVTGKH 13
K +GV ++ G +LHQ +A ++++ KH
Sbjct: 699 KNQGVLTEVEGGSLHQAEAADIEHSENKH 727
>05_07_0247 +
28643862-28644310,28645151-28645207,28645644-28648950,
28649069-28649144,28649356-28649426,28649524-28649589,
28649677-28649766,28649874-28650050,28650513-28650548
Length = 1442
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = +1
Query: 196 KKMQAFAGLPQTGVLDEPTKQLFKRKRCGLKDIDEDSHARNRRYIIQEGWNK--REVTYR 369
+K A G + P +L K ++C + D D + + + +G + + V R
Sbjct: 545 QKTDAAVGEEDKCEVTNPVTKLSKEQKCEVTAADSDLERYEKLWEVNDGRDAGVKHVNPR 604
Query: 370 LLNGSSTMSKDRIERLLENGLE 435
N +S M KDR+ +LE E
Sbjct: 605 EDN-TSPMGKDRVSMILEASTE 625
>04_04_1242 - 32016553-32016857,32017628-32017784,32017871-32018089,
32018184-32018470,32018629-32019934,32020021-32020178,
32020250-32020335,32023106-32023173,32023297-32023340,
32023418-32023490,32023605-32023684,32023774-32023867,
32023981-32024151,32024463-32024557,32025049-32025128,
32025137-32025333,32025896-32026183
Length = 1235
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +3
Query: 402 SHRKASRE-WFGGLGAPREPPLHET 473
S RK SR+ FG +G PR P LH T
Sbjct: 1144 SPRKLSRQNSFGSIGTPRTPNLHST 1168
>01_06_1123 +
34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 94 TLDEVNFLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDEPT 252
T+D V +LL Y Y S T ++ + + +F+G PQT E T
Sbjct: 182 TIDIVRYLLSYAYGSPVSYLKDKELTDSAVRNILAEFVSFSGFPQTSSYAEST 234
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 460 GGSRGAPKPPNHSLEAFLCDPCSLYLNHSGVCK 362
GGS+GA PP + + CD CS+ + G+ +
Sbjct: 96 GGSKGAA-PPARDIRRYKCDFCSVVRSKKGLIR 127
>07_03_1242 + 25113464-25114150
Length = 228
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 596 CISPSGGGNA*ATTRPGPSKGNPSPW 519
C+SP+G G A A R P+ G W
Sbjct: 169 CVSPAGAGGAPAGARGWPATGGGGGW 194
>10_01_0132 -
1601421-1601657,1601761-1601922,1602812-1603721,
1604587-1604651,1604704-1604746,1605086-1605128,
1605874-1605955,1606270-1606464,1606567-1606721,
1611207-1611435,1611538-1611693,1612539-1613476,
1614946-1614967
Length = 1078
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 67 TIYLELNSPTLDEVNFLLQYGYLSKDLAG 153
T++L+ NSP L+++ + GY +KD+ G
Sbjct: 354 TVFLQ-NSPKLEKLRLEIDEGYTAKDIKG 381
>03_02_0018 - 5016752-5017288
Length = 178
Score = 27.5 bits (58), Expect = 8.7
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Frame = -3
Query: 592 YRRVAVETREPLLDQGHRRGTRLHGCRKRNKLVCPLCLHLVS*S-------GGSRGAPKP 434
YRR+ P LD+ R G + R +L L L L S GG GA +
Sbjct: 103 YRRLYRLCLGPALDRLGRGGGAIAHAHARARLSLSLSLSLFSIDCYERLGGGGGAGAGRQ 162
Query: 433 PNHSLEAFLCDP 398
P S FLC P
Sbjct: 163 PQPSSLLFLCKP 174
>02_05_0226 +
26971851-26972034,26972734-26972834,26972876-26972978,
26973335-26973477,26973525-26973605,26973929-26974015,
26974097-26974239,26974746-26974896,26974973-26975095,
26975362-26975445,26975531-26975718,26976726-26976900,
26977008-26977129,26977231-26977310,26977532-26977590,
26977921-26978075,26978680-26978858,26980050-26980162,
26980243-26980413,26980552-26980680,26980756-26980856,
26980942-26981059,26981739-26981818,26983230-26983302,
26983865-26983950,26984025-26984076,26984221-26984352,
26984560-26984628,26984912-26985004,26985806-26985901,
26986710-26986808,26986894-26986986,26987459-26987608,
26988391-26988549
Length = 1323
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +1
Query: 55 VQCRTIYLELNSPTLD---EVNFLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAF 213
V C+ +Y EL + TL +VNF+L L K+ + ++ISEA+K++ F
Sbjct: 148 VGCKLVY-ELFTDTLTSRLKVNFVLGACILKKERKKKWDEHNQEAISEALKQLNEF 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,220,746
Number of Sequences: 37544
Number of extensions: 456133
Number of successful extensions: 1325
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -