Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6e15
         (164 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    26   0.58 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   0.77 
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   1.8  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    24   2.3  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    23   4.1  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    23   4.1  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    23   5.4  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    22   9.4  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    22   9.4  

>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +1

Query: 55  YITKTSFNK--ESFKRTIISKYKKNEIT 132
           Y T ++F K  ++FK+   SK+K +EIT
Sbjct: 349 YYTLSNFEKYCDNFKKNYFSKFKDSEIT 376


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 40   DRVETYITKTSFNKESFKRTIISKYKKNEITIYLDFR 150
            D++ + +TK SF K +F  +   KY++ +I +  DFR
Sbjct: 4258 DKIFSNLTKGSFEKLTFNFSNFVKYRQYQINL-KDFR 4293


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 34  DFDRVETYITKTSFNKESFKRTIISK 111
           D+  +E+Y  +    K+ F+R +ISK
Sbjct: 165 DYSSIESYAKQAIKQKQPFERLVISK 190


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 163 FFFKYENLNKSLSRSFY 113
           F+ K+E+LN+  SRS Y
Sbjct: 358 FYLKFESLNRIASRSCY 374


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 102 YCSLKTFFVKRSLCYICFN-TIK 37
           YC++++F+ K + C  C N T+K
Sbjct: 372 YCAMESFYKKDATCPHCGNMTVK 394


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 49  ETYITKTSFNKESFKRTIISKYKK 120
           E Y+    +NKE +K + I  Y+K
Sbjct: 684 ERYMDLPQYNKEGYKNSQIHDYEK 707


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 40  DRVETYITKTSFNKESFKRTIIS 108
           D + + + + SFNKES K+ I S
Sbjct: 396 DNMHSDVRQDSFNKESIKQRIPS 418


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 22  LDTTDFDRVETYIT 63
           LDTT+FDR+   IT
Sbjct: 118 LDTTNFDRLNDNIT 131


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 93  LKTFFVKRSLCYIC 52
           LKT FVKR++ ++C
Sbjct: 728 LKTDFVKRAMRFLC 741


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 580,386
Number of Sequences: 5004
Number of extensions: 7819
Number of successful extensions: 28
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 35
effective length of database: 2,187,338
effective search space used: 41559422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)