Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6e15
         (164 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0511 + 29644266-29644399,29644502-29644913,29645007-296450...    26   4.7  
09_04_0008 + 13651997-13652072,13652440-13652541,13653138-136531...    25   8.3  
01_05_0080 - 17957276-17957676,17957810-17957921,17958001-179581...    25   8.3  

>02_05_0511 +
           29644266-29644399,29644502-29644913,29645007-29645075,
           29645169-29645333,29645771-29645870,29645906-29646081
          Length = 351

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 10  CQKSLDTTDFDRVETYITKTSFNKESFKR 96
           CQK L      +V  Y+T   F K+S++R
Sbjct: 259 CQKVLAAHGAAKVSAYVTHAVFPKQSYER 287


>09_04_0008 +
           13651997-13652072,13652440-13652541,13653138-13653142,
           13653970-13654188,13654686-13654901,13654989-13655078,
           13656307-13656507
          Length = 302

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 16  KSLDTTDFDRVETYITKTSFNKESFKRTIISKYKKN 123
           K + T D   +   +T+T  + +  K     KYKK+
Sbjct: 243 KGMGTDDSTLIRVVVTRTEIDMQYIKAEYYKKYKKS 278


>01_05_0080 -
           17957276-17957676,17957810-17957921,17958001-17958126,
           17958199-17958331,17960069-17960193,17960314-17960409,
           17960430-17960621,17960694-17960800,17961318-17961426,
           17961538-17961624,17963017-17963103,17964254-17964379
          Length = 566

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -1

Query: 125 SFFLYFEIIVLLKLSLLKEVFVIYVSTRS 39
           S+F+  E+++LL  S+L E+ + Y  TRS
Sbjct: 212 SYFIADEVVILLLESILCELALPYNVTRS 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,932,283
Number of Sequences: 37544
Number of extensions: 30599
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 14,793,348
effective HSP length: 35
effective length of database: 13,479,308
effective search space used: 256106852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)