Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6e15
         (164 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81115-3|CAB03293.2|  486|Caenorhabditis elegans Hypothetical pr...    27   1.4  
CU457740-3|CAM36333.1|  367|Caenorhabditis elegans Hypothetical ...    25   7.2  
U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel...    25   9.5  
AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calciu...    25   9.5  

>Z81115-3|CAB03293.2|  486|Caenorhabditis elegans Hypothetical
           protein T05D4.3 protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -1

Query: 134 IVISFFLYFEIIVLLKLSLLKEVFVIYVSTRS 39
           +++  F+YF  +VL  ++L+  VF IY+  ++
Sbjct: 270 LIVGCFIYFATVVLSAITLVVTVFNIYLMRKT 301


>CU457740-3|CAM36333.1|  367|Caenorhabditis elegans Hypothetical
           protein C50E10.3 protein.
          Length = 367

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -1

Query: 125 SFFLY-FEIIVLLKLSLLKEVFVIYVSTRSKSVVS 24
           +F +Y FE IV L   ++  V ++ VST SKS++S
Sbjct: 285 TFLIYCFENIVHLNPLVICPVLILSVSTWSKSLLS 319


>U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel,
            alpha subunitprotein 1, isoform c protein.
          Length = 1852

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +1

Query: 4    HGCQKSLDTTDFDRVETYITKTSFNKESFKRTIISKYKKNEI 129
            H C+++L+    ++ +    K    ++ F+ ++  K KKN I
Sbjct: 1378 HKCKEALEKEMREKEKEKRLKRKLKRQKFEESMAGKRKKNRI 1419


>AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calcium
            channel alpha1 subunitisoform C protein.
          Length = 1852

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +1

Query: 4    HGCQKSLDTTDFDRVETYITKTSFNKESFKRTIISKYKKNEI 129
            H C+++L+    ++ +    K    ++ F+ ++  K KKN I
Sbjct: 1378 HKCKEALEKEMREKEKEKRLKRKLKRQKFEESMAGKRKKNRI 1419


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,007,987
Number of Sequences: 27780
Number of extensions: 39503
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 12,740,198
effective HSP length: 35
effective length of database: 11,767,898
effective search space used: 223590062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)