Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6e14
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...   109   3e-25
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...   106   2e-24
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.0  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   9.3  

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score =  109 bits (262), Expect = 3e-25
 Identities = 58/146 (39%), Positives = 69/146 (47%)
 Frame = +3

Query: 186 TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFH 365
           T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR FH
Sbjct: 3   THTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFH 62

Query: 366 FRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPV 545
             KN  + P +NLD+LWTLV  +TR KY        PVIN++++           P  PV
Sbjct: 63  LMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDTPV 122

Query: 546 IVXXXXXXXXXXXXXXDVGGACVLSA 623
           I+                GG   L A
Sbjct: 123 IIQTRYVSRRAEEKIKQAGGVVELIA 148


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score =  106 bits (255), Expect = 2e-24
 Identities = 57/146 (39%), Positives = 69/146 (47%)
 Frame = +3

Query: 186 TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFH 365
           T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR FH
Sbjct: 3   THVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFH 62

Query: 366 FRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPV 545
             KN  + P +NLD+LWTL+  + R KY        PVIN++++           P+ PV
Sbjct: 63  LMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPETPV 122

Query: 546 IVXXXXXXXXXXXXXXDVGGACVLSA 623
           IV                GG   L A
Sbjct: 123 IVQTRYVSRRAEEKIKQAGGVVELIA 148


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 31  IFYHKILVESLIKNIFSDLFY 93
           IFYH + ++S I+   +D+FY
Sbjct: 126 IFYHFVSLQSFIRKYLTDVFY 146


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/46 (21%), Positives = 25/46 (54%)
 Frame = +1

Query: 61  LIKNIFSDLFYIV*VMMKLLCSIFQIECVVFELYKFLFSCRPPQKR 198
           ++K++FS +FY++ V + +  ++F +   +        +  PP+ R
Sbjct: 253 IVKHLFSYIFYLIGVPITVYLAVFAVHSHIAYKASVADAFLPPEHR 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,961
Number of Sequences: 5004
Number of extensions: 53317
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)