Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6e14
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1250 - 25183375-25183815 110 1e-24
03_04_0027 + 16593133-16593573 106 2e-23
02_01_0563 + 4134954-4135388 104 7e-23
01_01_0054 + 411675-411911,412097-412213,412401-412439,412703-41... 29 3.1
11_03_0135 - 10547460-10547558,10547926-10548086,10548183-105483... 28 7.2
09_04_0302 + 16501020-16501049,16501568-16501659,16502063-165021... 27 9.6
08_02_1146 + 24678142-24678258,24678550-24678587,24678997-246790... 27 9.6
02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486 27 9.6
>07_03_1250 - 25183375-25183815
Length = 146
Score = 110 bits (264), Expect = 1e-24
Identities = 55/146 (37%), Positives = 77/146 (52%)
Frame = +3
Query: 186 TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFH 365
TS +K RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR FH
Sbjct: 3 TSLRKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 62
Query: 366 FRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPV 545
+NK + P +N+++LW++V + + A A GK P++++ + P++P+
Sbjct: 63 RLRNKFYSPAVNVERLWSMVPAEQAAEAAGA--GKAPLLDVTQFGYFKVLGKGLLPEKPI 120
Query: 546 IVXXXXXXXXXXXXXXDVGGACVLSA 623
+V GGA VL+A
Sbjct: 121 VVKAKLISKVAEKKIKAAGGAVVLTA 146
>03_04_0027 + 16593133-16593573
Length = 146
Score = 106 bits (254), Expect = 2e-23
Identities = 57/147 (38%), Positives = 74/147 (50%), Gaps = 1/147 (0%)
Frame = +3
Query: 186 TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFH 365
T KK RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR FH
Sbjct: 3 TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 62
Query: 366 FRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK-AXXXXXXXXXXXPKQP 542
N+ CP +N+++LW++V K A A GK PVI++ + P++P
Sbjct: 63 KLSNRFHCPAVNVERLWSMVPTD---KAAEAGAGKAPVIDVTQFGYTKVLGKGMLPPQRP 119
Query: 543 VIVXXXXXXXXXXXXXXDVGGACVLSA 623
++V GGA +L+A
Sbjct: 120 IVVKAKLISKVAEKKIKAAGGAVLLTA 146
>02_01_0563 + 4134954-4135388
Length = 144
Score = 104 bits (249), Expect = 7e-23
Identities = 56/147 (38%), Positives = 74/147 (50%), Gaps = 1/147 (0%)
Frame = +3
Query: 186 TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFH 365
T KK RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR FH
Sbjct: 3 TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 62
Query: 366 FRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK-AXXXXXXXXXXXPKQP 542
N+ CP +N+++LW++V + A A GK PVI++ + P++P
Sbjct: 63 RLSNRFHCPAVNVERLWSMVPAE-----AGAGAGKAPVIDVTQFGYTKVLGKGMLPPERP 117
Query: 543 VIVXXXXXXXXXXXXXXDVGGACVLSA 623
++V GGA +L+A
Sbjct: 118 IVVKAKLISKVAEKKIKAAGGAVLLTA 144
>01_01_0054 +
411675-411911,412097-412213,412401-412439,412703-412839,
413322-413670,413815-414495
Length = 519
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -3
Query: 279 YHDLLDAYGAFRYDHVRD*HDLSAS*SSFLRWPAGEQEFIKFEHNT---FYLKYTTQQLH 109
YHD GA H + + AS F++ G Q F+ + N FYL Y+++QL
Sbjct: 191 YHD-----GAKPIFHSPELKGIYASEGWFMKLMEGNQHFVVRDPNRAHLFYLPYSSRQLE 245
Query: 108 HHL 100
H+L
Sbjct: 246 HNL 248
>11_03_0135 -
10547460-10547558,10547926-10548086,10548183-10548306,
10548566-10548729,10549803-10549883,10549973-10550097,
10550200-10550430,10550566-10550588,10551055-10551539,
10551678-10552075,10552903-10552988,10553120-10553397,
10553494-10553714,10553927-10554018,10554148-10554213,
10555855-10556022
Length = 933
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 437 EAEVCICSRWQ-GPRHQYCQSWILQVARQRQTPQTTCHSK 553
E ++ +CSR G H YC ++Q + + TCHS+
Sbjct: 288 EEKLAVCSRCNDGAEHIYCMRVMMQEVPKAKWLCETCHSE 327
>09_04_0302 +
16501020-16501049,16501568-16501659,16502063-16502198,
16502297-16502727,16502950-16503028
Length = 255
Score = 27.5 bits (58), Expect = 9.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 306 FCDGAHHQHYHDLLDAYG 253
+C+G HH H H D+ G
Sbjct: 132 YCNGGHHHHGHQCYDSVG 149
>08_02_1146 +
24678142-24678258,24678550-24678587,24678997-24679012,
24679874-24680002,24680073-24680229,24680337-24680530,
24680668-24680916,24681196-24681309,24681949-24681990,
24682402-24682572,24682932-24683104,24683378-24683624,
24684046-24684130,24684401-24684510,24684714-24684977,
24685885-24685950,24686431-24686525,24686780-24686858
Length = 781
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/27 (33%), Positives = 12/27 (44%)
Frame = +2
Query: 470 GPRHQYCQSWILQVARQRQTPQTTCHS 550
GP H WI + +Q P+ HS
Sbjct: 258 GPMHNAADKWITEFGKQNNNPEEWAHS 284
>02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486
Length = 296
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 289 PPALPRPPGCLRCFPIRPCP 230
PPA P PP L C P+ P P
Sbjct: 10 PPAPPSPPPALPCDPMPPPP 29
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,506,334
Number of Sequences: 37544
Number of extensions: 340783
Number of successful extensions: 894
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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