Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6e14
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     29   0.051
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   1.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   4.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.4  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   4.4  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   4.4  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   4.4  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   4.4  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   4.4  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   4.4  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   4.4  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   4.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   7.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   7.7  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 0.051
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 177 GEQEFIKFEHNTFYLKYTTQQLHHHLNNIK*IGKNIFDKRFH*NFMIKY-FETNTNHGS 4
           G++EF  +EH   ++K + Q L  +   ++     +F+  F   F+  Y FE + N GS
Sbjct: 274 GKKEFSHYEHQNVFVKNSGQWLREYDRELEDFDGRLFE--FPIKFVPSYPFEEDINEGS 330


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 431 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQTPQT 538
           +DEAE    S+  G    + QS I +VAR+ +T  T
Sbjct: 272 SDEAEPSSTSKKSGIVRSHQQSCINRVARETKTAGT 307


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 48  SSGIAYQKYFFRFILYCLSDDEAAV*YISDRMCCVR 155
           S+ I   K+  RF+L CL D + ++  ++ R+  +R
Sbjct: 62  STNIGINKW--RFLLQCLEDLDCSLRKLNSRLFVIR 95



 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +2

Query: 476 RHQYCQSWILQVARQRQTPQTTCHSKS 556
           RH   ++W+    R + TPQ+   S++
Sbjct: 241 RHLERKAWVASFGRPKMTPQSLLPSQT 267


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 144 TFYLKYTTQQLHHHLNN 94
           T  +K  T Q HHHL N
Sbjct: 130 TGLIKQETLQRHHHLQN 146


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 56  NRLSKIFFPIYFILF 100
           +R S+I FP+ FI+F
Sbjct: 445 DRRSRIVFPVAFIIF 459


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 62  LSKIFFPIYFILF 100
           +S+IFFPI F  F
Sbjct: 418 ISRIFFPIVFAFF 430


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 62  LSKIFFPIYFILF 100
           +S+IFFPI F  F
Sbjct: 418 ISRIFFPIVFAFF 430


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +2

Query: 431 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 526
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +2

Query: 431 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 526
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +2

Query: 431 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 526
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +2

Query: 431 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 526
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +2

Query: 431 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 526
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +2

Query: 431 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 526
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +2

Query: 431 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 526
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +2

Query: 431 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 526
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 423 VSEQTRLKYASAPDGKVPVI 482
           V EQT      A D KVP+I
Sbjct: 230 VKEQTLQSIEMAKDAKVPII 249


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 416 DISL*TDEAEVCICSRWQGPRHQYCQ 493
           D+S    E + CI  + Q  R QYC+
Sbjct: 141 DLSYACREEKSCIIDKRQRNRCQYCR 166


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 416 DISL*TDEAEVCICSRWQGPRHQYCQ 493
           D+S    E + CI  + Q  R QYC+
Sbjct: 141 DLSYACREEKSCIIDKRQRNRCQYCR 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,913
Number of Sequences: 438
Number of extensions: 3688
Number of successful extensions: 20
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)