Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6e13
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0310 + 20114415-20117819                                         29   3.4  
12_02_0626 - 21344530-21344986,21346132-21346469,21347300-213473...    28   5.9  
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30...    28   5.9  
02_05_1169 + 34656450-34656603,34657321-34657481,34657907-346579...    27   7.8  

>05_04_0310 + 20114415-20117819
          Length = 1134

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 257 ELNGIKYEGVCSHRCLSGSGCAGRGRLML 343
           ELN ++ E  C  RCL G G  GRG   L
Sbjct: 47  ELNQLRAEAGCVERCLGGGG-GGRGNCEL 74


>12_02_0626 -
           21344530-21344986,21346132-21346469,21347300-21347338,
           21347572-21347629,21349854-21350136,21350404-21350766,
           21350768-21350840
          Length = 536

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +2

Query: 296 RCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPIQGQPRCSERTEG 448
           + ++G G +GRG ++  +  PR     + +A +R L   +G  +C +   G
Sbjct: 87  KAVTGGGRSGRGLVVCCQMAPRRGGGERRSAQRRRLERRKGGDQCDDELSG 137


>11_01_0040 -
           304439-304482,304589-304652,304766-304831,305509-305640,
           305744-305804,305885-306018,306310-306654
          Length = 281

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 450 LASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSD 563
           L S+    SY Y    +YF+      +GFAK F++ SD
Sbjct: 130 LCSVEYNASYAYHSLFAYFDRDNVALKGFAKFFKESSD 167


>02_05_1169 +
           34656450-34656603,34657321-34657481,34657907-34657958,
           34658289-34658425,34658775-34658861,34658939-34659226
          Length = 292

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -1

Query: 390 SAADLKSVCILGRRSDSMSLPRPAHPEPDRQR*EHTPSYLMPFSS 256
           SA +L SV     RS++  LP+  HP P+ Q    +P    PF S
Sbjct: 241 SAKNLLSVVESWLRSET-KLPKKEHPRPETQPRRSSPFDASPFRS 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,878,019
Number of Sequences: 37544
Number of extensions: 246220
Number of successful extensions: 600
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)