Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6e13
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-46|CAB54455.3|  795|Caenorhabditis elegans Hypothetical p...    33   0.11 
Z70780-10|CAA94827.1|  330|Caenorhabditis elegans Hypothetical p...    29   1.7  
U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U40933-2|AAL27242.1|  158|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z49912-1|CAA90140.1|  588|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U80452-1|AAB37864.1|  270|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>Z99281-46|CAB54455.3|  795|Caenorhabditis elegans Hypothetical
           protein Y57G11C.32 protein.
          Length = 795

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = -1

Query: 243 INYTNHKVLVTICQTTRRHIFAITKKKNPGN 151
           INY+ H+VL+ + + T RH+F+I  ++N  N
Sbjct: 273 INYSLHRVLLLMLRITYRHLFSIALRENHNN 303


>Z70780-10|CAA94827.1|  330|Caenorhabditis elegans Hypothetical
           protein F46B6.11 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 252 IVN*MASNMKVYALIVACLALGVLAEEDSCY 344
           I N  +SN+  Y  ++ C+AL V A   SCY
Sbjct: 270 IANLFSSNLYAYMFLLRCIALDVRAHIVSCY 300


>U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical
           protein C39D10.3a protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +2

Query: 329 GRLMLSERRPRMQT----DFKSAALQRVLRPIQGQP 424
           GRLML  ++  M+T    DFKSA L   L P+  +P
Sbjct: 115 GRLMLVTKKHHMETDSILDFKSAILPFALDPLSNEP 150


>U40933-2|AAL27242.1|  158|Caenorhabditis elegans Hypothetical
           protein F20D12.7 protein.
          Length = 158

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 548 EELRESFPVRLVVVEVGGRQEIMVGTFQIQ*G 453
           EE+ E   V LV++ +GGR   +VGT ++  G
Sbjct: 87  EEITEPSSVLLVMITMGGRMANVVGTMKLYKG 118


>Z49912-1|CAA90140.1|  588|Caenorhabditis elegans Hypothetical
           protein T24F1.2 protein.
          Length = 588

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 82  TLDTFNKFNSIKKKHHHLIFTKYRIKH 2
           T+    K    KKK+ +L+  KY++KH
Sbjct: 158 TIQVHGKLEEDKKKYSYLLKVKYKLKH 184


>U80452-1|AAB37864.1|  270|Caenorhabditis elegans Hypothetical
           protein C16C8.18 protein.
          Length = 270

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 297 VACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQ-FKDNHVVANELKALASL 461
           V C   G LAEE S  + +D G +    L    A Y Q F+  H+       +ASL
Sbjct: 121 VLCSTCGRLAEESSLKKKLDYGFKFKTYLDEAIAIYDQDFELTHMRGRFCYTVASL 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,259,129
Number of Sequences: 27780
Number of extensions: 215441
Number of successful extensions: 580
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)