Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6e12
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   144   6e-36
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   144   6e-36
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    37   0.001
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    25   5.4  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    25   5.4  
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    24   9.4  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  144 bits (348), Expect = 6e-36
 Identities = 67/92 (72%), Positives = 79/92 (85%)
 Frame = +3

Query: 3   ILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 182
           IL+ G +KF+ VDIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K  L+ 
Sbjct: 49  ILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALIT 108

Query: 183 YDRSLLVADPRRCEPKKFGGPGARARYQKSYR 278
           YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 109 YDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  144 bits (348), Expect = 6e-36
 Identities = 67/92 (72%), Positives = 79/92 (85%)
 Frame = +3

Query: 3   ILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 182
           IL+ G +KF+ VDIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K  L+ 
Sbjct: 49  ILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALIT 108

Query: 183 YDRSLLVADPRRCEPKKFGGPGARARYQKSYR 278
           YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 109 YDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 36.7 bits (81), Expect = 0.001
 Identities = 28/75 (37%), Positives = 38/75 (50%)
 Frame = +3

Query: 39  DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 218
           ++  TV GGG   Q  A+  AISK+LI      + E S K+     V  D   ++ D R+
Sbjct: 64  NVWATVHGGGPTGQSGAVHAAISKSLI------LQEPSLKQ-----VIKDTHCVLNDKRK 112

Query: 219 CEPKKFGGPGARARY 263
            E KK G P AR +Y
Sbjct: 113 VERKKTGQPKARKKY 127


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 89  YQTSYFKGSDRLLPEICRRSLKEGNQRHPS 178
           Y   YF G D   PE C        QRH S
Sbjct: 42  YHEPYFDGLDSAFPETCEIQQVHLLQRHGS 71


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 259 DTRNLTVKPSRKPSGGIVAASCCH 330
           D  N+ VKP+  P+  +    CCH
Sbjct: 566 DRFNVIVKPALNPAERMTVRICCH 589


>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 135 YVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGG 242
           ++DEA+ K+I  +   Y  +LL   P    P K GG
Sbjct: 226 FLDEATVKKIHILGSNYKSALLEQIPADNLPAKLGG 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,484,039
Number of Sequences: 5004
Number of extensions: 25691
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)