Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6e12
(383 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 152 8e-38
11_01_0155 - 1287003-1287452 152 8e-38
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 32 0.18
11_06_0598 - 25391923-25393197 28 2.9
11_01_0523 - 4109070-4109984,4110532-4110936 28 2.9
11_04_0467 + 18039458-18039638,18040136-18040227,18040336-180404... 27 6.7
01_06_0609 + 30583191-30583229,30583799-30583907,30584377-30585518 27 6.7
07_03_1550 + 27641099-27641288,27641433-27641646,27641738-276418... 26 8.9
02_05_0056 + 25461423-25461708,25461986-25462026,25466047-254660... 26 8.9
>12_01_0152 - 1168928-1169377
Length = 149
Score = 152 bits (369), Expect = 8e-38
Identities = 67/92 (72%), Positives = 82/92 (89%)
Frame = +3
Query: 3 ILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 182
ILL G+ +F +D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +
Sbjct: 58 ILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFAR 117
Query: 183 YDRSLLVADPRRCEPKKFGGPGARARYQKSYR 278
YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 118 YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149
>11_01_0155 - 1287003-1287452
Length = 149
Score = 152 bits (369), Expect = 8e-38
Identities = 67/92 (72%), Positives = 82/92 (89%)
Frame = +3
Query: 3 ILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 182
ILL G+ +F +D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +
Sbjct: 58 ILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFAR 117
Query: 183 YDRSLLVADPRRCEPKKFGGPGARARYQKSYR 278
YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 118 YDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 31.9 bits (69), Expect = 0.18
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +3
Query: 39 DIRVTVKGGGHVAQVYAIRQAISKAL 116
D+ TVKGGG QV AIR IS+AL
Sbjct: 347 DVTCTVKGGGVSGQVGAIRLGISRAL 372
>11_06_0598 - 25391923-25393197
Length = 424
Score = 27.9 bits (59), Expect = 2.9
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -2
Query: 259 LARAPGPPNFLGSQRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIRAF 107
LA PP L S TS L + T + ++ S+TY AIR F
Sbjct: 254 LATLVSPPKLLQSLNISGITSGLPDWITELDQLTKITLSNTYLGEDAIRVF 304
>11_01_0523 - 4109070-4109984,4110532-4110936
Length = 439
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 60 GGGHVAQVYAIRQAISKALIAFY 128
GGG V +++A++KAL+AFY
Sbjct: 48 GGGGFFDVGRLKEALAKALVAFY 70
>11_04_0467 +
18039458-18039638,18040136-18040227,18040336-18040452,
18041228-18041313,18041385-18041643,18041761-18041957,
18042181-18042213,18043371-18043862,18044236-18044299,
18045478-18045618,18045726-18045803,18047077-18047166,
18047260-18047352,18047430-18047489,18047567-18047635,
18047737-18047823,18048337-18048379,18048517-18048587,
18049050-18049143,18050335-18050447,18050909-18050998,
18051075-18051155,18052211-18052291,18052369-18052464,
18052543-18052599,18052693-18052737,18052807-18052872,
18052961-18052999
Length = 1004
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 15 GKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIA 122
GK+ + R++V GGG+ Q+ A IS+A ++
Sbjct: 118 GKQSNELGHARISVTGGGYFHQLLAEHTIISEAFLS 153
>01_06_0609 + 30583191-30583229,30583799-30583907,30584377-30585518
Length = 429
Score = 26.6 bits (56), Expect = 6.7
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 262 TRNLTVKPSRKPSGGIVAASCCHCDIIGW 348
TR V + + G+ A + CH D GW
Sbjct: 367 TRAYAVSMAGRDGTGVEAVAVCHADTAGW 395
>07_03_1550 +
27641099-27641288,27641433-27641646,27641738-27641843,
27642213-27642257,27642275-27642540,27642980-27642991,
27643201-27643480,27643716-27643823,27644276-27644362,
27644448-27644552,27644995-27645125,27645249-27645309
Length = 534
Score = 26.2 bits (55), Expect = 8.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 48 VTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKD 170
VT G G VA + R ++ L+ + + V E +KEI D
Sbjct: 379 VTAAGSGCVAALSVERYLVANDLLVEFHQPVREEKEKEITD 419
>02_05_0056 +
25461423-25461708,25461986-25462026,25466047-25466083,
25466451-25466594,25466882-25466974,25467067-25467155,
25467241-25467537,25467629-25467765,25467860-25467952,
25468061-25468166,25468243-25468395
Length = 491
Score = 26.2 bits (55), Expect = 8.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 48 VTVKGGGHVAQVYAIRQAIS 107
VT++G GH ++A RQA+S
Sbjct: 455 VTIRGAGHEVPLHAPRQALS 474
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,295,751
Number of Sequences: 37544
Number of extensions: 189707
Number of successful extensions: 519
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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