Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6e08
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    27   2.6  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    27   3.4  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    26   4.5  

>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 523 SARDVSRTIIRLNSWFSPSRI*PDFTDPKPVTTVSPNFNGRSASGSGNGTA 371
           +A +    + R++S  S S +    T   P +   PN NG ++  SG G A
Sbjct: 227 NANESQHNLKRMSSGDSGSSVKQQSTRDGPFSKSFPNGNGHASGNSGEGLA 277


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
 Frame = +3

Query: 351 AANSRMQAVPLPEPDADLPLKFGETVVTGFGSVKSGQIREGENQELRRMIVRETSRA--E 524
           A  SR     LP+  A +  ++ + +   F S K  + +      LR    R   R+  +
Sbjct: 455 ALGSRSSMCTLPQLFA-VAFEYFDFITDSFVSAKRKEFKSSVLYSLRCFTKRSHLRSVYQ 513

Query: 525 CRLLYGNDYLLQHDNMCLQSVVTGVALCAGDIGDPAVHFNGINR 656
             LL   D  L +D     + +    +C GD+ +  + FNG  R
Sbjct: 514 TTLLSNTDLDLVYDAFI--NAIGENNICHGDVLEQKIDFNGFER 555


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 234 RDFGGRILSVLDVRRHPDYRVDQYYPEHNLAMVKVNLPI 350
           +D  G  + +++ R HP +   QY+PE+    +K + PI
Sbjct: 508 KDERGERMEIIEKRDHPYFVGVQYHPEYLSKPLKPSPPI 546


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,480
Number of Sequences: 5004
Number of extensions: 56790
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)