Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6e08
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0413 + 17742993-17743500,17744301-17744426,17745196-177453... 31 0.87
11_04_0268 - 15561250-15561561,15561953-15562103,15562173-155624... 29 2.7
09_02_0448 - 9458463-9459752 29 3.5
04_04_0626 - 26686411-26686518,26686876-26686953,26687763-266878... 29 3.5
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 29 4.7
10_08_0231 - 16045293-16045309,16045377-16045677,16045764-16046648 29 4.7
08_01_0162 - 1302497-1302787,1304608-1305271,1305380-1306927,130... 29 4.7
06_02_0364 + 15178583-15178881,15179652-15179723,15179853-151799... 28 6.2
10_08_0759 + 20376532-20376753,20376821-20377009,20377113-20377658 28 8.1
08_02_1322 + 26131395-26131599,26132382-26132468,26133119-261333... 28 8.1
06_01_0506 + 3648546-3649256 28 8.1
>10_08_0413 +
17742993-17743500,17744301-17744426,17745196-17745323,
17745462-17745675,17745932-17746163,17746233-17746383,
17746744-17746896,17747132-17747155
Length = 511
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 435 GFGSVKSGQIREGENQELRRMIVRETSRAE 524
GFG V G ++ G+ ++R+ V ETSRA+
Sbjct: 248 GFGDVFKGLLKNGKTVAVKRLTVMETSRAK 277
>11_04_0268 -
15561250-15561561,15561953-15562103,15562173-15562404,
15562878-15563091,15563240-15563367,15564347-15564524
Length = 404
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 435 GFGSVKSGQIREGENQELRRMIVRETSRAE 524
GFG V ++ G+ ++R+ V ETSRA+
Sbjct: 96 GFGDVFKASLKNGKTVAVKRLTVMETSRAK 125
>09_02_0448 - 9458463-9459752
Length = 429
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 450 KSGQIREGENQELRRMIVRETSRAECRLLYGND 548
+ G I +G+ LR + T RA C + +GND
Sbjct: 219 RGGAIDDGDGVHLRGATLHLTGRAACWIFFGND 251
>04_04_0626 -
26686411-26686518,26686876-26686953,26687763-26687810,
26688012-26688167,26688725-26688795,26689949-26690055,
26690145-26691112
Length = 511
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 5/38 (13%)
Frame = -2
Query: 122 WMVTSLRGIVNRTCLILSIYVCRM--FA---YKNTSST 24
WMV SLRG+V+ L+L I + R+ FA + +TSST
Sbjct: 287 WMVQSLRGLVSWWVLVLGIQLMRVAWFAGLKFASTSST 324
>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 111 KFTWNCK*DVPNLKYICMSHVRV*K-HIEY 25
K TWN K + LKY C+S R+ + H++Y
Sbjct: 1503 KMTWNLKFQIQALKYPCVSCQRLSRLHLDY 1532
>10_08_0231 - 16045293-16045309,16045377-16045677,16045764-16046648
Length = 400
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 688 ENNAIPNSVPARFMPLKCTAGSPMSPAQSATPVTTLCRH 572
E+ PN P R MP K AG PM ++++ L H
Sbjct: 360 EDKGSPNKPPKRTMPRKKLAGRPMPKIRTSSRYKPLGNH 398
>08_01_0162 -
1302497-1302787,1304608-1305271,1305380-1306927,
1307360-1308768
Length = 1303
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = -3
Query: 523 SARDVSRTIIRLNSWFSPSRI*PDFTDPKPVTTVSPNFNGRSASGSGNGTACMRLLAAI 347
+A S + +L SW+ S + P P PV SP+ S SGSG A + AA+
Sbjct: 764 AATSTSVELHQLRSWYFSSSLEPKAAPP-PVAPPSPSPPPTSGSGSGGVVAGATVGAAL 821
>06_02_0364 +
15178583-15178881,15179652-15179723,15179853-15179917,
15180890-15180934,15182493-15183170,15183376-15183410,
15183647-15183736,15183896-15183985,15184164-15184262,
15184938-15185013,15185473-15185588
Length = 554
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 261 VLDVRRHPDYRVD--QYYPEHNLAMVKVNLPIAANSRMQAV 377
++ + RH +RVD ++ P H++ + + +PI A +R +V
Sbjct: 127 LMGMHRHRQHRVDFMEWAPGHHVGVALITMPIRAGARYCSV 167
>10_08_0759 + 20376532-20376753,20376821-20377009,20377113-20377658
Length = 318
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 274 RTSSTDRIRPPKSRNTDPM-RTDTSSFVTLQILIILN 167
R S T + PPK RN D + R TS +T+ +++L+
Sbjct: 156 RASMTGDLPPPKQRNVDQLARYFTSKGLTVDDMVVLS 192
>08_02_1322 +
26131395-26131599,26132382-26132468,26133119-26133372,
26133430-26133526,26133613-26133693,26133782-26133976,
26134093-26134182,26134296-26134471,26134565-26134687,
26134799-26134945,26135027-26135163,26135247-26135364,
26135462-26135518
Length = 588
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 381 LPEPDADLPLKFGETVVTGFGSVKSGQIREGENQELRRMIVRE 509
+P P AD L GE + FG ++ GE +E+ + +R+
Sbjct: 7 MPPPGADDDLMMGEDGMGDFGGADGPPLKVGEEKEIGKQGLRK 49
>06_01_0506 + 3648546-3649256
Length = 236
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 348 IAANSRMQAVPL-PEPDADLPLKFGETVVTGFGSVKSGQIREGENQELRRMIVRETSRAE 524
+ A R + P P+PDADL + F G G + + ++ E L+R+ + +S AE
Sbjct: 45 VVAKKRPEEEPRRPDPDADLGIVFSTFDHDGDGFITAAELEE----SLKRLGIAVSSAAE 100
Query: 525 CRLL 536
L
Sbjct: 101 AAAL 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,965,770
Number of Sequences: 37544
Number of extensions: 392815
Number of successful extensions: 1336
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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