Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6e07
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    30   0.25 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    28   1.00 
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    27   2.3  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    26   4.0  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    26   4.0  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   4.0  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    26   4.0  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    25   7.0  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   7.0  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   9.3  
SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit ...    25   9.3  

>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 28/102 (27%), Positives = 43/102 (42%)
 Frame = +3

Query: 138 LMAMKVLTRLQEIPEFNRENIHIRDETELVAKLNRIIKGGHNKLQIVTDFDHTLTRHTLD 317
           LM+     +   +PEF R+   + DE     K+  ++ G H  LQ +   D TL+   +D
Sbjct: 62  LMSFLNFDKEYSVPEFERDASRVIDEIHSQGKIPIVVGGTHYYLQSLLFEDTTLS--AID 119

Query: 318 NGKSVLTSFGMFRECPSIPQHYKDEDVRLASIYKPIEADPVM 443
                LT+     + P    H  D+D      Y   + DPVM
Sbjct: 120 K----LTNDSSPSKPPHPDSHILDDDPSAMLSYLK-KIDPVM 156


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
 Frame = -2

Query: 592  IINSLTPFLKLSIILLATCV--NSLLGNCTPLSNA*AAIYQSTMCLVFSSTVITGS 431
            I+NS TP    S++  +T +  +S+L + TP++++ + +  ST   + SSTV+  S
Sbjct: 3101 IVNSSTPITSSSVLNSSTAITSSSILNSSTPITSS-SILNSSTP--ITSSTVVNSS 3153



 Score = 27.9 bits (59), Expect = 1.3
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = -2

Query: 622  STGTSWV*LQIINSLTPFLKLSIILLATCV--NSLLGNCTPLSNA*AAIYQSTMCLVFSS 449
            +T TS     ++NS TP    +++  +T +  +S+L + TP++++   +  ST   + SS
Sbjct: 2647 NTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSS-TVVNTSTP--ITSS 2703

Query: 448  TVITGS 431
            TV+  S
Sbjct: 2704 TVVNSS 2709



 Score = 27.9 bits (59), Expect = 1.3
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = -2

Query: 622  STGTSWV*LQIINSLTPFLKLSIILLATCV--NSLLGNCTPLSNA*AAIYQSTMCLVFSS 449
            +T TS     ++NS TP    +++  +T +  +S+L + TP++++   +  ST   + SS
Sbjct: 2875 NTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSS-TVVNTSTP--ITSS 2931

Query: 448  TVITGS 431
            TV+  S
Sbjct: 2932 TVVNSS 2937



 Score = 27.9 bits (59), Expect = 1.3
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = -2

Query: 622  STGTSWV*LQIINSLTPFLKLSIILLATCV--NSLLGNCTPLSNA*AAIYQSTMCLVFSS 449
            +T TS     ++NS TP    +++  +T +  +S+L + TP++++   +  ST   + SS
Sbjct: 2971 NTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSS-TVVNTSTP--ITSS 3027

Query: 448  TVITGS 431
            TV+  S
Sbjct: 3028 TVVNSS 3033



 Score = 27.5 bits (58), Expect = 1.7
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = -2

Query: 622  STGTSWV*LQIINSLTPFLKLSIILLATCV--NSLLGNCTPLSNA*AAIYQSTMCLVFSS 449
            +T TS     ++NS TP    +++  +T +  +S+L + TP++++   +  ST   + SS
Sbjct: 1303 NTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSS-TVVNSSTP--ITSS 1359

Query: 448  TVITGS 431
            TV+  S
Sbjct: 1360 TVVNTS 1365



 Score = 26.2 bits (55), Expect = 4.0
 Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = -2

Query: 622  STGTSWV*LQIINSLTPFLKLSIILLATCV--NSLLGNCTPLSNA*AAIYQSTMCLVFSS 449
            +T TS     ++NS TP    +++  +T +  +S+L + TP++++   +  ST   + SS
Sbjct: 2371 NTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSS-TVVNTSTS--ITSS 2427

Query: 448  TVITGS 431
            +V+  S
Sbjct: 2428 SVLNSS 2433



 Score = 25.4 bits (53), Expect = 7.0
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
 Frame = -2

Query: 622 STGTSWV*LQIINSLTPFLKLSIILLATCV--NSLLGNCTPLSNA*AAIYQST----MCL 461
           +T TS     ++NS TP    +++  +T +  +S+L + TP++++   +  ST      +
Sbjct: 535 NTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSS-TVVNTSTPITRYSV 593

Query: 460 VFSSTVITGS 431
           + SST IT S
Sbjct: 594 LNSSTPITSS 603


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 390 EDVRLASIYKPIEADPVMTVEEKTKHMVDWYIAAHALLKGVQFP 521
           E VRL  I  P       T +++ KH   W IA+  +L+  + P
Sbjct: 253 EPVRLPPIGHPARETMPFTDDDEGKHCFVWDIASGRILRSFKIP 296


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
 Frame = +3

Query: 81  NLDGRQTFEYYIIILFLN*LMAMKVLTRLQEIPE--FNRENIHIRDETELVAKLNRIIKG 254
           NLD  +   Y  + L  N +  ++ +  L+ +    F +  I   +  E + +L  +  G
Sbjct: 99  NLDNVKNLTY--LDLSFNNIKTIRNINHLKGLENLFFVQNRIRRIENLEGLDRLTNLELG 156

Query: 255 GHNKLQIVTDFDHTLTRHTLDNGKSVLTSFGMFRE 359
           G NK++++ + D  +    L  GK+ +T F  F +
Sbjct: 157 G-NKIRVIENLDTLVNLEKLWVGKNKITKFENFEK 190


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 363 PSIPQHYKDEDVRLASIYKPIEADPVMTVEEKTKHMVDWYIAAHA 497
           PS+P    +  V   + Y+  EADPV    +  KH+ D++  ++A
Sbjct: 190 PSLPLLDSNAVVECFNSYQS-EADPVSNASKALKHVNDYFNTSYA 233


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 620  HRNLMGLTPNYQFFNALPKTVYHFIS 543
            H +      NY+ +NAL +++Y FI+
Sbjct: 1297 HDSCQAYKVNYEIYNALIRSIYRFIN 1322


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +3

Query: 366 SIPQHYKDEDVRLASIYKPIEADPVM 443
           SIP+    EDV   S  KPIEA P M
Sbjct: 37  SIPEKKLKEDVDQVSTTKPIEAVPKM 62


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 351 FRECPSIPQHYKDEDVRLASIYKPIEADPVMTVEEKTK 464
           F+    +P  + DE+  +    KPI  + V+ + EK K
Sbjct: 653 FQSKEGLPDWFLDEETTVNKPNKPITKEAVLALREKMK 690


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
 Frame = +3

Query: 138  LMAMKVLTRLQEIPEFNRENIHIRDETELVAKLNRIIKGG--HNKLQIVTDFDHTLT 302
            + + + +T+L  + EF+   + +RD+T    KL+RII+ G   +K+ +V    H ++
Sbjct: 973  ISSQRRVTQLGVVEEFDIL-LELRDKTLYAHKLSRIIEMGLIESKIAVVIGTPHAVS 1028


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 192 ENIHIRDETELVAKLNRIIKGGHNKLQIVT---DFDHTLTRHTLDNGK 326
           ENIH+ DE+ L+  L +I+        ++T   + DH + R  L N +
Sbjct: 562 ENIHLADESSLII-LQKIVYSDLPLTLMITCDKENDHVINRFRLANDR 608


>SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit
           Apc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 375 QHYKDEDVRLASIYKPIEADPVMTVEE 455
           Q  KD  VRL  IY P    P + V+E
Sbjct: 148 QSGKDSHVRLIKIYAPEIEQPAIAVDE 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,616
Number of Sequences: 5004
Number of extensions: 59989
Number of successful extensions: 170
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)