Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6e07
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0502 + 24947444-24947665,24947768-24947823,24947929-249480...    64   7e-11
01_03_0285 - 14604499-14604608,14604692-14605203,14605339-146054...    29   3.1  
10_07_0106 - 12933918-12934041,12934164-12934486,12934584-129349...    27   9.6  
04_04_1031 - 30254665-30255794,30256181-30257036                       27   9.6  

>03_05_0502 +
           24947444-24947665,24947768-24947823,24947929-24948099,
           24948508-24948631,24949086-24949142,24949216-24949312,
           24949619-24949826,24950637-24950697,24950793-24950846
          Length = 349

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 2/147 (1%)
 Frame = +3

Query: 207 RDETELVAKLNRIIKGGHNKLQIVTDFDHTLTRH-TLDNGKSVLTSFGMFRECPSIPQHY 383
           R+   +VA  + + + G    Q++ DFD TLTR+   +    V    G         + Y
Sbjct: 59  RNPGSVVADADGLARKGLELPQVIADFDGTLTRYWEFERCMCVYVVVGSHGLLRQGNEEY 118

Query: 384 KDEDVRLASIYKPIEADPVMTVEEKTKHMVDWYIAAHALL-KGVQFPRSELTHVANKMID 560
             +   L   Y PIE  P + + EK K M +W+   HALL +G     +    VA+  I 
Sbjct: 119 DAKREELFEHYHPIEICPDIPLPEKAKLMEEWWEKTHALLIEGGLTYEAIRQSVADAKI- 177

Query: 561 SFRKGVKELIIWSQTHEVPVLVFSAGL 641
           +FR GV +L  + +  ++PVLVFSAGL
Sbjct: 178 TFRDGVVKLFEFLEERDIPVLVFSAGL 204


>01_03_0285 -
           14604499-14604608,14604692-14605203,14605339-14605418,
           14605597-14605699,14605759-14605907,14606088-14606180,
           14606289-14606675,14607690-14608124,14608198-14608311,
           14608405-14608453,14608684-14608843,14608941-14609499
          Length = 916

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 4   LFLVPRLYLFVRFLFSYLNRKYSKNTTW 87
           LF++    LFV     YL+RK+ K TTW
Sbjct: 543 LFVIVYTLLFVHGTCLYLSRKWYKKTTW 570


>10_07_0106 -
           12933918-12934041,12934164-12934486,12934584-12934937,
           12935029-12935646
          Length = 472

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +3

Query: 339 SFGMFRECPSIPQHYKDEDVRLASIYKPIEADPVMTVEEKTKHMVDWYIAAHA 497
           +FG    CPS P++    D+    +   ++  PV+  E   +   D  +A HA
Sbjct: 37  TFGSLAGCPSSPEYPVVPDLDDCVVDTAVDDAPVVAAEAAGRRASDETLAVHA 89


>04_04_1031 - 30254665-30255794,30256181-30257036
          Length = 661

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 536 CQFASWKLYSFE*CMS--SNIPIDHVFGLLFHGHNRVGLDGLIYTC 405
           C FAS+ ++S E   S  SNIPI + FG+L  G N     G   TC
Sbjct: 18  CIFASY-VHSMESSTSKCSNIPIPYPFGIL--GGNPAPAQGFEITC 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,309,303
Number of Sequences: 37544
Number of extensions: 359126
Number of successful extensions: 828
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)