Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6e06
         (577 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   0.94 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   2.9  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   5.0  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   5.0  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   6.6  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   6.6  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   6.6  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   8.7  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 415 NNFLGNNKHPDYKNKVANLLDKYQKLGCNM 504
           NN+  NN + +Y N   N  + Y+KL  N+
Sbjct: 327 NNYNNNNYNNNYNNYNNNNYNNYKKLYYNI 356


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 5   YIYFLNFFLLIYKISMLLVRVGQYSTRQALRSKIM 109
           ++YF+  FL+IY    ++  V  +      ++K M
Sbjct: 223 WVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKKM 257


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 5   YIYFLNFFLLIYKISMLLVRVGQYSTRQALRSKIM 109
           ++YF+  FL+IY    ++  V  +      ++K M
Sbjct: 99  WVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKKM 133


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 415 NNFLGNNKHPDYKNKVANLLDKYQKLGCNMS 507
           NN+  NN + +Y N   N  + Y+KL  N++
Sbjct: 328 NNY--NNNYNNYNNYNNNYNNNYKKLYYNIN 356


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 342 HQRSDLRSIEHSFN 301
           HQR   +++EHS N
Sbjct: 23  HQRKSSKNLEHSMN 36


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 475 DKYQKLGCNMSIKLHFLDSHVDFFP 549
           + Y+KL CN   KL++  ++++  P
Sbjct: 94  NNYKKLYCNNYKKLYYNINYIEQIP 118


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 475 DKYQKLGCNMSIKLHFLDSHVDFFP 549
           + Y+KL CN   KL++  ++++  P
Sbjct: 94  NNYKKLYCNNYKKLYYNINYIEQIP 118


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 475 DKYQKLGCNMSIKLHFLDSHVDFFP 549
           + Y+KL CN   KL++  ++++  P
Sbjct: 94  NNYKKLYCNNYRKLYYNINYIEQIP 118


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 484 QKLGCNMSIKLHFLDSH 534
           +   C  S+K HF D H
Sbjct: 13  RNFSCYYSLKRHFQDKH 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,910
Number of Sequences: 438
Number of extensions: 3274
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)