Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6e05
         (142 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p...    25   9.7  
Z82084-7|CAB04979.2|  499|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr...    25   9.7  
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch...    25   9.7  

>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
           protein F11C3.3 protein.
          Length = 1963

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 77  FKSSVNNY*NSLNKTHQH 130
           ++ S+NN    LNKTH H
Sbjct: 658 YRESLNNLMTMLNKTHPH 675


>Z82084-7|CAB04979.2|  499|Caenorhabditis elegans Hypothetical
           protein ZK1053.6 protein.
          Length = 499

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 29  IFLCIFANIVFYCYSSFKSSVNN 97
           I +CI  N++ YC      S++N
Sbjct: 162 ILICILTNLISYCIVQITPSLDN 184


>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical
           protein F11C3.3 protein.
          Length = 1963

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 77  FKSSVNNY*NSLNKTHQH 130
           ++ S+NN    LNKTH H
Sbjct: 658 YRESLNNLMTMLNKTHPH 675


>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
           protein.
          Length = 1966

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 77  FKSSVNNY*NSLNKTHQH 130
           ++ S+NN    LNKTH H
Sbjct: 661 YRESLNNLMTMLNKTHPH 678


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,802
Number of Sequences: 27780
Number of extensions: 24153
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 12,740,198
effective HSP length: 27
effective length of database: 11,990,138
effective search space used: 227812622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)