Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6e03
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    56   4e-09
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    31   0.15 
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...    30   0.27 
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    27   1.9  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    26   4.4  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   4.4  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   5.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   5.8  

>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
 Frame = +1

Query: 382 TSEIKPGDLLLSEQPFAYVLSSKEQGNRCDNCLE-KVKLLKCSGCQFVYYCGRSCQKDAW 558
           T  I  G +++ ++     L S      C  C E KVK  +C+ C+ ++YC + CQK  W
Sbjct: 21  TDNIPIGKIIIRKRVDILSLDSANLTRTCSTCTEEKVKTQRCAACKIIHYCSKGCQKADW 80

Query: 559 GDHKVKFSFYIKLTNKQKQYTIFLPSSCS*ILKLY 663
             HK++     K     KQ  I LPS C  +++LY
Sbjct: 81  PFHKLE----CKALQASKQNGI-LPSVCRLLIRLY 110


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 499 KCSGCQFVYYCGRSCQKDAWGDH 567
           KC  C+   YC + CQ  AW  H
Sbjct: 497 KCRRCRRTKYCSKECQHQAWPGH 519


>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 457 GNRCDNCLEKVKLLKC--SGCQFVYYCGRSCQKDAWGDHK 570
           G  C+N  ++++  KC   G +  Y+CG+ C +++W  HK
Sbjct: 12  GIDCNNEADRLQCPKCLNDGVKS-YFCGQECFRNSWNIHK 50


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 472 YHIGFLVLWTIIHKRMVALTTKDLQVLFRKLYF 374
           Y IGFL+L+TI     V L+   L + F   YF
Sbjct: 347 YAIGFLILFTIGGLTGVILSNSVLDIAFHDTYF 379


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +1

Query: 337 INDVVEEMRSKFRNTTS---EIKPGDLLLSEQPFAYVLSS 447
           + +V+EE     R  T+   E K G+L+L    F YVLSS
Sbjct: 626 VYEVLEEAERLLRVMTTPDAEAKFGELILRRPEFGYVLSS 665


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 147 HHLVHQK*KQTKTEFLFLETNIFYKYISFDIWTFY 43
           HHL+    K+++   L   + ++YKY  F +   Y
Sbjct: 348 HHLLENLSKESRLHILLQLSQLYYKYNDFQLSAAY 382


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 547 SDKIFHSNKQIDILNILGV*LFLSNYHI-GFLVLWTIIHKRMVALTTK 407
           S K F+SN  +D      + LFL N+ + G +V++    KR+ ALT K
Sbjct: 517 SVKRFYSNSFVDFQRQEAISLFLGNFTVHGKIVVFG--EKRLQALTEK 562


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 662  YNFNIYEQDEGKKIVYCFCLFVN 594
            Y+  IY  D+G K++ CF ++ N
Sbjct: 1638 YDLCIYNYDDGLKLLSCFHMYKN 1660


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,494
Number of Sequences: 5004
Number of extensions: 57258
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)