Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6e03
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0841 - 28104977-28105142,28105439-28105502,28105586-281056... 66 2e-11
10_08_0571 - 18855317-18855541,18855667-18855747,18855849-188559... 40 0.002
06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046... 36 0.030
07_03_0378 + 17446311-17446514,17446814-17446927,17447124-174472... 32 0.49
06_03_0914 + 25920277-25920405,25920783-25920810,25920890-259209... 31 1.1
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 31 1.1
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942 29 2.6
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745... 29 4.5
03_05_0932 + 28924891-28924935,28925982-28926062,28926464-289265... 29 4.5
03_01_0004 + 41829-42203,42376-42474,42699-42743,43604-43741,438... 29 4.5
07_03_1292 - 25558643-25559376,25559989-25560097,25560578-255606... 28 6.0
04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959 28 6.0
>03_05_0841 -
28104977-28105142,28105439-28105502,28105586-28105655,
28105743-28105852,28106217-28106295,28106610-28106691,
28106791-28106879,28107351-28107425,28107728-28107862,
28108018-28108163,28108380-28108491
Length = 375
Score = 66.5 bits (155), Expect = 2e-11
Identities = 25/73 (34%), Positives = 44/73 (60%)
Frame = +1
Query: 397 PGDLLLSEQPFAYVLSSKEQGNRCDNCLEKVKLLKCSGCQFVYYCGRSCQKDAWGDHKVK 576
PG++++S++P+A + G+ CDNC L KCS C+ +YCG +CQ++ W H+++
Sbjct: 37 PGEVVISQEPYASTPNKISVGSNCDNCFASRNLRKCSVCRVAWYCGSACQREEWKLHQLE 96
Query: 577 FSFYIKLTNKQKQ 615
LT +K+
Sbjct: 97 CRAIAALTEDRKK 109
>10_08_0571 -
18855317-18855541,18855667-18855747,18855849-18855963,
18856061-18856224,18856307-18856540,18856626-18856781,
18857113-18857244,18857850-18857984,18858071-18858457,
18858708-18858826,18858914-18859124,18859268-18859339,
18859542-18859628,18859993-18860127,18860240-18860368
Length = 793
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Frame = +1
Query: 328 KYIINDVVEEMRSKFRNTTSEIKPGDLLLSEQPFAYVLSSKEQGNRCDNCLEKVK--LLK 501
K I+ + + ++ ++I P L+ +E P A ++ + C C + ++
Sbjct: 216 KVILECTSTPNKGRGMSSPNDISPASLIHAEDPLAVIIMKSCRDTHCHYCFSEAPADVVV 275
Query: 502 CSGCQFVYYCGRSCQKDAWGDHKVKFSFYIKLTN 603
C C YC CQ+ A G + +++ N
Sbjct: 276 CPSCTIPIYCSNRCQEKAIGQMSCNQNTHLESNN 309
>06_03_0968 -
26402154-26403834,26404322-26404383,26404473-26404682,
26404776-26404860,26405461-26405618,26405745-26405868,
26405955-26406123,26406202-26406287,26406379-26406467,
26406564-26406735,26407820-26408193
Length = 1069
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 457 GNRCDNCLEKVKLLKCSGCQFVYYCGRSCQKDAW-GDHKVK 576
G C C + KCSGC+ V YC + CQ W HK K
Sbjct: 102 GEPCAAC-GYIATKKCSGCKRVRYCSQGCQSKHWQSGHKFK 141
>07_03_0378 +
17446311-17446514,17446814-17446927,17447124-17447242,
17447595-17447641,17447720-17447820,17450769-17450840,
17451290-17451403,17451495-17451500,17451501-17451611
Length = 295
Score = 31.9 bits (69), Expect = 0.49
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 499 KCSGCQFVYYCGRSCQKDAWGDHK 570
+C GC V YC R+ Q WG HK
Sbjct: 53 RCGGCGAVAYCSRAHQTVHWGFHK 76
>06_03_0914 +
25920277-25920405,25920783-25920810,25920890-25920990,
25921356-25921479,25921793-25921903,25922222-25922397,
25922766-25922848,25922935-25923007,25923630-25923695,
25923776-25923818,25924600-25924739,25924878-25925090,
25925397-25925481,25925558-25925852,25926855-25927110,
25927237-25927450,25927701-25927912,25928054-25928203
Length = 832
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/75 (25%), Positives = 40/75 (53%)
Frame = +3
Query: 33 VQNHKMSKCQRRYIYKKCLSLKIGTQFLFVSTSDVPSDDCGRVFSKYNVTDIENCIFRTP 212
VQ+ + + +R++ K+ + K+G + + V + DC + S+ + ++ C TP
Sbjct: 274 VQDQQSRELSQRHVSKR--AKKLGLKEEEIKLKPVIAFDCAEIRSR-DWCNVVTCHTDTP 330
Query: 213 GSERSRLQNFLLQQH 257
+ RLQNF++ +H
Sbjct: 331 QAYVWRLQNFVIGEH 345
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = +1
Query: 379 TTSEIKPGDLLLSEQPFAYVLSSKEQGNRCDNCLEKVKLLKCSGCQFVYYCGRSCQKDAW 558
T I PG L S++ + + C C K +CS C+ V YC CQ W
Sbjct: 3 TPDVILPGPSLRPMPYMRSAPSARPEYHECATCHGPAKT-RCSRCKSVRYCSGKCQIIHW 61
>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
Length = 379
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 484 KVKLLKCSGCQFVYYCGRSCQKDAW 558
K + +CS C V YC R+CQ W
Sbjct: 316 KHEFRRCSVCSGVIYCSRACQAMHW 340
>10_08_0584 + 18971761-18971834,18971852-18973133,18973197-18974509,
18993885-18993935,18994674-18994829,18995048-18995123,
18995317-18995364,18995445-18995489,18995580-18995679,
18995923-18995968,18996115-18996176,18996257-18996355,
18996536-18996609,18996721-18996790,18997074-18997162,
18997327-18997404
Length = 1220
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +1
Query: 466 CDNCLEKVKLLKCSGCQFVYYCGRSCQKDAWGDHKVKFSFYIKLTNKQKQYT 621
C C + +KLL+ G F C + C K+AW HK S +IKL Q T
Sbjct: 891 CPKCAQ-LKLLR-EGAAF---CTQDCFKEAWSSHK---SVHIKLDALTLQQT 934
>03_05_0932 +
28924891-28924935,28925982-28926062,28926464-28926512,
28926599-28926677,28926762-28926921,28927307-28927440,
28927814-28927882,28928064-28928151,28928396-28928471,
28929267-28929340,28929478-28929585,28929858-28930160,
28930483-28930587,28930670-28930750,28930838-28931852,
28932086-28932201
Length = 860
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 181 PILRIVFLERQVASEAAYKISYFNSTRSRLFKNWKLI 291
P+L + +VAS+ +Y + YF T NW+++
Sbjct: 191 PVLPVSITPCKVASDGSYAVQYFEKTFPLSRANWEML 227
>03_01_0004 +
41829-42203,42376-42474,42699-42743,43604-43741,
43852-44157,44779-45689,45826-46093
Length = 713
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 469 DNCLEKVKLLKCSGCQFVYYCGRSCQKDAWGDH 567
D +E + L C+GC+F GR DA GDH
Sbjct: 184 DYFIEVLGLRNCAGCRFYRAEGRGNLWDAKGDH 216
>07_03_1292 -
25558643-25559376,25559989-25560097,25560578-25560676,
25560797-25560893,25560973-25561027,25561072-25561187,
25561445-25561562,25562369-25562684
Length = 547
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 6 CVSCQNATDVQNHKMSKCQRRY 71
C++C+ AT V N +S C R Y
Sbjct: 161 CINCKGATSVGNKPLSVCIRNY 182
>04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959
Length = 395
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 499 KCSGCQFVYYCGRSCQKDAW 558
+CS C V YC R+CQ W
Sbjct: 341 RCSVCGVVNYCSRACQALHW 360
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,966,177
Number of Sequences: 37544
Number of extensions: 297909
Number of successful extensions: 595
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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