Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6e03
(677 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81125-2|CAD56600.1| 507|Caenorhabditis elegans Hypothetical pr... 48 5e-06
Z81125-1|CAB03382.1| 501|Caenorhabditis elegans Hypothetical pr... 48 5e-06
Z46794-3|CAA86783.1| 429|Caenorhabditis elegans Hypothetical pr... 47 1e-05
U64862-6|AAB52623.3| 560|Caenorhabditis elegans Temporarily ass... 37 0.015
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 36 0.020
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 36 0.020
Z81526-4|CAB04267.2| 430|Caenorhabditis elegans Hypothetical pr... 35 0.061
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr... 34 0.11
U41625-3|AAA83326.1| 264|Caenorhabditis elegans Hypothetical pr... 34 0.11
AF016421-11|AAM45373.2| 417|Caenorhabditis elegans Hypothetical... 31 0.57
AC024757-4|AAK68429.2| 371|Caenorhabditis elegans Methionine am... 31 1.00
AC024792-3|AAF60684.2| 388|Caenorhabditis elegans Hypothetical ... 30 1.3
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 28 5.3
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 28 5.3
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 28 5.3
Z32683-13|CAA83630.1| 386|Caenorhabditis elegans Hypothetical p... 28 7.0
>Z81125-2|CAD56600.1| 507|Caenorhabditis elegans Hypothetical
protein T22A3.4b protein.
Length = 507
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1
Query: 418 EQPFAYVLSSKEQGNRCDNCLEKV----KLLKCSGCQFVYYCGRSCQKDAWGDHK 570
E PFA + + + C NCL KLL+C GC F YC + CQ AW HK
Sbjct: 33 ETPFATQVLNPKVSEFCANCLRGPAPGEKLLRCGGCNFSMYCSKECQATAWLVHK 87
>Z81125-1|CAB03382.1| 501|Caenorhabditis elegans Hypothetical
protein T22A3.4a protein.
Length = 501
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1
Query: 418 EQPFAYVLSSKEQGNRCDNCLEKV----KLLKCSGCQFVYYCGRSCQKDAWGDHK 570
E PFA + + + C NCL KLL+C GC F YC + CQ AW HK
Sbjct: 33 ETPFATQVLNPKVSEFCANCLRGPAPGEKLLRCGGCNFSMYCSKECQATAWLVHK 87
>Z46794-3|CAA86783.1| 429|Caenorhabditis elegans Hypothetical
protein R06F6.4 protein.
Length = 429
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +1
Query: 412 LSEQPFAYVLSSKEQGNRCDNCLEKV-KLLKCSGCQFVYYCGRSCQKDAWGDHKVK 576
L E +A+ L+ + + C+ CL + +L KCS C+ + YC + CQ+ W HKV+
Sbjct: 8 LHENVYAFALARDQVESYCNQCLTSMAELKKCSACRRLAYCSQECQRADWKLHKVE 63
>U64862-6|AAB52623.3| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 226 protein.
Length = 560
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 424 PFAYVLSSKEQGNRCDNCLEKVKLLKCSGCQFVYYCGRSCQKDAWGDHK 570
PFAY L + + C CL + L C C+ +C + C+ DHK
Sbjct: 27 PFAYSLLDCTKDDYCWTCLGENVELTCEQCKVAKFCSKQCETSGAIDHK 75
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 36.3 bits (80), Expect = 0.020
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Frame = +1
Query: 406 LLLSEQPFAYVLSSKEQGNRCDNC-----LEKVKL--LKCSGCQFVYYCGRSCQKDAWGD 564
+L S + ++L ++E RC C L +L + C C + YYC R C+ + W +
Sbjct: 1220 VLKSPERAEHILQNEELFVRCTECHRTRELSAARLFFVSCKHC-YTYYCSRECRHNNWPN 1278
Query: 565 HKVKFSF 585
H + SF
Sbjct: 1279 HSGRCSF 1285
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 36.3 bits (80), Expect = 0.020
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Frame = +1
Query: 406 LLLSEQPFAYVLSSKEQGNRCDNC-----LEKVKL--LKCSGCQFVYYCGRSCQKDAWGD 564
+L S + ++L ++E RC C L +L + C C + YYC R C+ + W +
Sbjct: 1261 VLKSPERAEHILQNEELFVRCTECHRTRELSAARLFFVSCKHC-YTYYCSRECRHNNWPN 1319
Query: 565 HKVKFSF 585
H + SF
Sbjct: 1320 HSGRCSF 1326
>Z81526-4|CAB04267.2| 430|Caenorhabditis elegans Hypothetical
protein F33H2.7 protein.
Length = 430
Score = 34.7 bits (76), Expect = 0.061
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Frame = +1
Query: 418 EQPFAYVLSSKEQGNRCDNCL------EKVKLLKCSGCQFVYYCGRSCQKDAW 558
EQP A VLS + C C ++ ++L C C V YC CQ+ W
Sbjct: 7 EQPLAAVLSPQFSELYCATCFLEIDSSQETEILTCDDCLAVSYCTLKCQRKDW 59
>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
protein F07A11.4 protein.
Length = 1095
Score = 33.9 bits (74), Expect = 0.11
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Frame = +1
Query: 337 INDVVEEMRSKFRNTTSEIKPGDLLLSEQPFAYVLSSKEQGNRCDNC-LEKVKLLKCSGC 513
++D+V R T E++ + ++ L K + C C K+KL C C
Sbjct: 673 VSDIVSPDRLFVFQTHDEMEFNEEIVILHVLQRELYRKNTKHACHECGNSKLKLKACEEC 732
Query: 514 QFVYYCGRSCQKDAW--GDHKVKFS 582
YC + CQ W G H+ + S
Sbjct: 733 YDAVYCSKECQVANWSTGGHREECS 757
>U41625-3|AAA83326.1| 264|Caenorhabditis elegans Hypothetical
protein K03A1.4a protein.
Length = 264
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -2
Query: 412 TKDLQVLFRKLYF*ICSSFPQPRH*L-YISRLNCKNVLEECKLISNF 275
+K L LF + +C FP P+H I+ NCKN +EE K NF
Sbjct: 90 SKTLFSLFFRFCASLCGVFPYPKHAATQITASNCKNKIEEYKRAFNF 136
>AF016421-11|AAM45373.2| 417|Caenorhabditis elegans Hypothetical
protein F44E7.8 protein.
Length = 417
Score = 31.5 bits (68), Expect = 0.57
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 8/149 (5%)
Frame = +3
Query: 12 SCQNATDVQNHKMSKCQRRYI----YKKCLSLKIGTQFLFVSTSDVPSDDCGRVFSKYNV 179
SC+ A+ Q ++ K +R YKKCL L + + + + S D R + +
Sbjct: 61 SCRKAS--QGCRIDKSERYLCRLCRYKKCLQLGMTADNVQWNRDMISSTDRKRQSEEDDA 118
Query: 180 TDIENCIFRTPGSERSRLQNFLLQQHSK*TI*KLEINLHSSKTFLQFNL----EIYN**R 347
TD++ +PGS++S L L S+ T+ K+ KTF++F + +Y
Sbjct: 119 TDVDAYSDWSPGSKKSCLDAPPLYDLSR-TLNKIH------KTFMEFKIPVDDPVYQSTS 171
Query: 348 G*GNEEQIQKYNFRNKTWRSFVVRATIRL 434
G + + + +NK ++F + TIRL
Sbjct: 172 TLGKMDWALRRHRKNKKMQNFRIINTIRL 200
>AC024757-4|AAK68429.2| 371|Caenorhabditis elegans Methionine
aminopeptidase protein 1 protein.
Length = 371
Score = 30.7 bits (66), Expect = 1.00
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Frame = +1
Query: 454 QGNRCDNCLEKVKLLKCSGC-----QFVYYCGRSCQKDAWGDHKVKFS 582
+G +C C + KL +C C Y+C +SC K W HK S
Sbjct: 5 EGKKCIGCQKPAKL-RCPTCIKMSLPDAYFCDQSCFKAFWPIHKFSHS 51
>AC024792-3|AAF60684.2| 388|Caenorhabditis elegans Hypothetical
protein Y48G1A.3 protein.
Length = 388
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 466 CDNCLEKVKLLKCSGCQFVYYCGRSCQKDAWGDHKVKFSF 585
C C +C+ C+ Y C + CQK W HK SF
Sbjct: 321 CSVCGHPGAKKRCTQCKLAY-CSQECQKFDWPIHKKVCSF 359
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
protein K08C7.3b protein.
Length = 3672
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 451 EQGNRCDNCLEKVKLLKCSGCQFVYY 528
E G C NC E + + C+ C F Y+
Sbjct: 386 EGGGVCKNCRENTEGVNCNKCSFGYF 411
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
protein K08C7.3a protein.
Length = 3704
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 451 EQGNRCDNCLEKVKLLKCSGCQFVYY 528
E G C NC E + + C+ C F Y+
Sbjct: 386 EGGGVCKNCRENTEGVNCNKCSFGYF 411
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 451 EQGNRCDNCLEKVKLLKCSGCQFVYY 528
E G C NC E + + C+ C F Y+
Sbjct: 386 EGGGVCKNCRENTEGVNCNKCSFGYF 411
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 451 EQGNRCDNCLEKVKLLKCSGCQFVYY 528
E G C NC E + + C+ C F Y+
Sbjct: 386 EGGGVCKNCRENTEGVNCNKCSFGYF 411
>Z32683-13|CAA83630.1| 386|Caenorhabditis elegans Hypothetical
protein R07E5.10a protein.
Length = 386
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 499 KCSGCQFVYYCGRSCQKDAWGDHKVK 576
KC+ CQ YC ++ Q W HK++
Sbjct: 156 KCAKCQVARYCSQAHQVIDWPAHKLE 181
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,189,582
Number of Sequences: 27780
Number of extensions: 317778
Number of successful extensions: 877
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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