Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6e01
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    27   0.13 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.6  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   8.7  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 26.6 bits (56), Expect = 0.13
 Identities = 16/70 (22%), Positives = 32/70 (45%)
 Frame = +3

Query: 213 PPPVPNEEVSLINHLVLEYLEWNGYLYTAAVMASEANTVEKRTRADLCAEVGVKDDEKSS 392
           PPP+ + E S +   +LE ++ +GY    A+       +        CA+ G      + 
Sbjct: 154 PPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTG-SGKTAAF 212

Query: 393 TLPLLSNVVT 422
            LP++ N+++
Sbjct: 213 MLPIIHNLLS 222


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = -1

Query: 446  PLNPVRVCCHDIR*QW--QGGGLLII--LDPDFCTQVCSG 339
            P +  +V C+     W  QG G  +   +DPD CT +  G
Sbjct: 1819 PKSEFKVVCYFTNWAWYRQGVGKYLPSDIDPDLCTHIVYG 1858



 Score = 20.6 bits (41), Expect = 8.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 374  LDPDFCTQVCSG 339
            +DPD CT +  G
Sbjct: 1422 IDPDLCTHIVYG 1433


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 233 FIRDGGWIFLCTV 195
           F+R+  WIFL TV
Sbjct: 107 FLREISWIFLETV 119


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,671
Number of Sequences: 336
Number of extensions: 2962
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)