Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6d22
         (518 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P83876 Cluster: Thioredoxin-like protein 4A; n=73; Euka...    45   0.001
UniRef50_UPI0000DC08B7 Cluster: UPI0000DC08B7 related cluster; n...    41   0.015
UniRef50_Q0D7X3 Cluster: Os07g0202300 protein; n=1; Oryza sativa...    38   0.10 
UniRef50_UPI0000503C33 Cluster: UPI0000503C33 related cluster; n...    35   0.97 
UniRef50_Q4UHH2 Cluster: U5 snRNP-specific component (DIM1 homol...    35   0.97 
UniRef50_A3DBH4 Cluster: Sulfatase; n=1; Clostridium thermocellu...    33   5.2  
UniRef50_A4IP41 Cluster: Copper ABC transporter; n=1; Geobacillu...    32   9.0  
UniRef50_Q1JV38 Cluster: Liver stage protein2; n=14; Plasmodium ...    32   9.0  

>UniRef50_P83876 Cluster: Thioredoxin-like protein 4A; n=73;
           Eukaryota|Rep: Thioredoxin-like protein 4A - Homo
           sapiens (Human)
          Length = 142

 Score = 45.2 bits (102), Expect = 0.001
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +1

Query: 457 MSYMLGHLHNGWQVDQAILS 516
           MSYML HLHNGWQVDQAILS
Sbjct: 1   MSYMLPHLHNGWQVDQAILS 20


>UniRef50_UPI0000DC08B7 Cluster: UPI0000DC08B7 related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DC08B7 UniRef100 entry -
           Rattus norvegicus
          Length = 89

 Score = 41.1 bits (92), Expect = 0.015
 Identities = 17/20 (85%), Positives = 18/20 (90%)
 Frame = +1

Query: 457 MSYMLGHLHNGWQVDQAILS 516
           M Y+L HLHNGWQVDQAILS
Sbjct: 1   MYYILPHLHNGWQVDQAILS 20


>UniRef50_Q0D7X3 Cluster: Os07g0202300 protein; n=1; Oryza sativa
           (japonica cultivar-group)|Rep: Os07g0202300 protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 299

 Score = 38.3 bits (85), Expect = 0.10
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = +1

Query: 457 MSYMLGHLHNGWQVDQAILS 516
           MSY+L HLH+GW VDQAIL+
Sbjct: 1   MSYLLPHLHSGWAVDQAILA 20


>UniRef50_UPI0000503C33 Cluster: UPI0000503C33 related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000503C33 UniRef100 entry -
           Rattus norvegicus
          Length = 95

 Score = 35.1 bits (77), Expect = 0.97
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +1

Query: 466 MLGHLHNGWQVDQAILS 516
           ML HLHNGWQVDQAI S
Sbjct: 3   MLLHLHNGWQVDQAIHS 19


>UniRef50_Q4UHH2 Cluster: U5 snRNP-specific component (DIM1
           homologue), putative; n=1; Theileria annulata|Rep: U5
           snRNP-specific component (DIM1 homologue), putative -
           Theileria annulata
          Length = 196

 Score = 35.1 bits (77), Expect = 0.97
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +1

Query: 457 MSYMLGHLHNGWQVDQAILS 516
           MSYML HL +GW VDQAI++
Sbjct: 1   MSYMLQHLRSGWAVDQAIVT 20


>UniRef50_A3DBH4 Cluster: Sulfatase; n=1; Clostridium thermocellum
           ATCC 27405|Rep: Sulfatase - Clostridium thermocellum
           (strain ATCC 27405 / DSM 1237)
          Length = 629

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 24/70 (34%), Positives = 33/70 (47%)
 Frame = -1

Query: 470 SI*LILQINYFTYYFKQTIIPVFFFLEIAIAMSKI*SCCRTTEQILILFCSLKFAFHI*D 291
           +I LI   N+F YY+    IPVFF L I +  S         E IL  F  LK   ++ D
Sbjct: 88  TILLIADTNFFRYYYNLITIPVFFQLNIKLVSS-------VNESILSQF-MLKDLIYLVD 139

Query: 290 IPKLFYSHIL 261
           +P +    +L
Sbjct: 140 LPFMLIGVLL 149


>UniRef50_A4IP41 Cluster: Copper ABC transporter; n=1; Geobacillus
           thermodenitrificans NG80-2|Rep: Copper ABC transporter -
           Geobacillus thermodenitrificans (strain NG80-2)
          Length = 265

 Score = 31.9 bits (69), Expect = 9.0
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = -1

Query: 458 ILQINYFTYYFKQTIIPVFFFLEIAIAMSKI*SCCRTTEQIL--ILFCSLKFAFHI*DIP 285
           +  ++YF Y+   T++ VF F +I I +      C+T  Q++   LF +  F  ++ D  
Sbjct: 125 VFHLSYFLYFLLATVVLVFIFNQIGIGLG---FACKTKIQLIGANLFAAF-FFIYLYDFV 180

Query: 284 KLFYSHILFLVTVHVF 237
            L+    +    VHVF
Sbjct: 181 LLYILPSVTYDNVHVF 196


>UniRef50_Q1JV38 Cluster: Liver stage protein2; n=14; Plasmodium
           (Vinckeia)|Rep: Liver stage protein2 - Plasmodium
           berghei
          Length = 3249

 Score = 31.9 bits (69), Expect = 9.0
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
 Frame = +3

Query: 363 LYFAHSNSNFQKK---EYRNNRLFEIIRKVVYLQNELYARTSTQW 488
           +YF H   NF+ +   ++R+ R++EII K +  + +LY R S ++
Sbjct: 599 IYFGHGYPNFKVRNMNKHRDKRVYEIIHKQMESKYKLYNRHSNEY 643


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 480,267,261
Number of Sequences: 1657284
Number of extensions: 8685339
Number of successful extensions: 21943
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 21116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21937
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32201017387
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)