Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6d22
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit Dim1|S...    39   4e-04
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    27   2.2  
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   2.9  
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    26   3.9  
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    25   6.8  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    25   6.8  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   6.8  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   9.0  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    25   9.0  

>SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit
           Dim1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +1

Query: 457 MSYMLGHLHNGWQVDQAILS 516
           MSY L HLH+GW VDQAILS
Sbjct: 1   MSYFLPHLHSGWHVDQAILS 20


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 341 QILILFCSLKFAFHI*DIPKLFYSHILFLVTVHVFY 234
           Q+++L C L +  +  DIP+ F  H+   +T  + Y
Sbjct: 203 QVILLECKLFYDLNCQDIPEFFEDHMSEFMTAFLNY 238


>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -1

Query: 281 LFYSHILFLVTVHVFYRSVFKKFRA 207
           +F+ ++  ++  + F+R VFKK++A
Sbjct: 173 VFHGYLTSILEAYEFFRGVFKKYKA 197


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 333 DIILLTEICLSHLRHSKVI 277
           DI+LL+++  +H  HSK+I
Sbjct: 157 DILLLSDLVFNHTEHSKLI 175


>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 300 HLRHSKVILFSHFVSRHCSR 241
           HLR +K I+ ++FV + CSR
Sbjct: 217 HLRSNKSIVVNNFVGQLCSR 236


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -1

Query: 284 KLFYSHILFLVTVHVFYRSVFKKF 213
           + +Y H +F+ T H F+ ++++ F
Sbjct: 465 RFYYGHYVFVNTCHNFFLTLYQSF 488


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 2  TSFHPYHY*LHIKLI 46
          T  HPY+Y  HIKLI
Sbjct: 36 TILHPYNYDSHIKLI 50


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 468 HITHFANKLLYVLFQTNDYSCILFSGNCYCYEQN 367
           +I+HFA  LLY L  ++ Y  I  +    CY +N
Sbjct: 606 NISHFAQSLLYTLLISDRYG-INTNQALLCYLEN 638


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 511 EWPDLLANHCVDVLAYNS 458
           EWP  LA+H +  LA N+
Sbjct: 144 EWPQWLASHDIPTLAINN 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,116,074
Number of Sequences: 5004
Number of extensions: 41132
Number of successful extensions: 117
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)