Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6d22
         (518 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0434 + 17896432-17896551,17896709-17896786,17898528-17898836     38   0.004
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553...    38   0.004
12_01_0081 - 657672-657713,657993-658151,658359-658919                 27   9.0  
06_01_0560 - 3977456-3977527,3978069-3978182,3978264-3978335,397...    27   9.0  

>10_08_0434 + 17896432-17896551,17896709-17896786,17898528-17898836
          Length = 168

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = +1

Query: 457 MSYMLGHLHNGWQVDQAILS 516
           MSY+L HLH+GW VDQAIL+
Sbjct: 1   MSYLLPHLHSGWAVDQAILA 20


>07_01_0725 -
           5532803-5533324,5533631-5533657,5534285-5534398,
           5534564-5534731,5535951-5536193,5537178-5537261,
           5537357-5538117,5539637-5539730,5540633-5540899,
           5541311-5541316,5542538-5542657
          Length = 801

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = +1

Query: 457 MSYMLGHLHNGWQVDQAILS 516
           MSY+L HLH+GW VDQAIL+
Sbjct: 1   MSYLLPHLHSGWAVDQAILA 20


>12_01_0081 - 657672-657713,657993-658151,658359-658919
          Length = 253

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 493 ANHCVDVLAYNSFCK 449
           +NHC +VL+Y  FC+
Sbjct: 127 SNHCFEVLSYGGFCE 141


>06_01_0560 -
           3977456-3977527,3978069-3978182,3978264-3978335,
           3978428-3978497,3978608-3978705,3978791-3978992,
           3979074-3979141,3979960-3980358
          Length = 364

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 88  LIPPPFLLENGTATVIRHTVVCDF 159
           +I PP+ LE G A +I +T  CD+
Sbjct: 277 MIQPPWDLEIGDAFIIHYTYGCDY 300


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,282,635
Number of Sequences: 37544
Number of extensions: 210718
Number of successful extensions: 376
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)