Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6d22
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71259-4|CAA95788.2|  501|Caenorhabditis elegans Hypothetical pr...    27   6.1  
U56961-6|AAK39299.1|  497|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U50191-10|AAK31550.2| 1146|Caenorhabditis elegans Hypothetical p...    27   8.0  
AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine re...    24   9.2  

>Z71259-4|CAA95788.2|  501|Caenorhabditis elegans Hypothetical
           protein F13G3.3 protein.
          Length = 501

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 330 YQYLFSGPTTRLYFAHSNSNFQKKEYRNNRLFEIIRKVVYLQNELYART 476
           ++YL S   T  YF +S  N + K Y+   +F I   +  +++E    T
Sbjct: 275 FRYLASEHPTVAYFTYSKENTRIKAYKRANVFSIEHVLRNIKHEQQTET 323


>U56961-6|AAK39299.1|  497|Caenorhabditis elegans Hypothetical
           protein T19D7.1 protein.
          Length = 497

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 369 FAHSNSNFQKKEYRNNRLFEIIRKVVYLQNELY 467
           F +S S+ QKK  +N ++F  IRK++ L   +Y
Sbjct: 156 FDNSKSSCQKKLLKNWKIFLKIRKMLSLSRNVY 188


>U50191-10|AAK31550.2| 1146|Caenorhabditis elegans Hypothetical
           protein T14B4.1 protein.
          Length = 1146

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -3

Query: 192 CYFITKRMFLKKITDHSMTYD---SSSSIFQQERRRYQSI 82
           C  I +  F+KK TDH +  D   +S+SI  +E++   S+
Sbjct: 585 CLLIAR--FIKKCTDHKLALDCIRASASIVNEEKKSLNSL 622


>AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein78 protein.
          Length = 353

 Score = 24.2 bits (50), Expect(2) = 9.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 455 LQINYFTYYFKQTIIPVFFFLEIAIAMS 372
           LQI++F     Q  IP+ F + I I M+
Sbjct: 252 LQISFFRSIVMQVSIPLLFLIPIFIIMT 279



 Score = 21.0 bits (42), Expect(2) = 9.2
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 458 ILQINYFTYY 429
           ILQINYF  Y
Sbjct: 223 ILQINYFVIY 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,606,569
Number of Sequences: 27780
Number of extensions: 227390
Number of successful extensions: 611
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)