Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6d21
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0456 - 17362080-17364156,17364853-17364942,17372615-173733...    29   4.2  
02_01_0123 + 896128-896429,896578-896608,896903-896995,897096-89...    29   4.2  
03_02_0613 - 9848514-9848539,9848942-9849200,9849326-9849365,984...    27   9.7  

>08_02_0456 -
           17362080-17364156,17364853-17364942,17372615-17373318,
           17373421-17373451,17374366-17374448,17374517-17374640,
           17376427-17376560
          Length = 1080

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 414 ISLPSLNQIVYGHCFFHVSFVGIRISLHFVDNKNCFV 304
           I+   +N++    CF HV  V     LHFVD+K  F+
Sbjct: 420 ITTTRINEVAESCCFPHVHRVYKLRPLHFVDSKRLFL 456


>02_01_0123 +
           896128-896429,896578-896608,896903-896995,897096-897158,
           897279-897390,897947-898032,898845-898903,898990-899092,
           899182-899242,899472-899554,899635-899715,900018-900077
          Length = 377

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
 Frame = -2

Query: 634 ITCVTRDIACLVPYLKSFSSNVGSHTF---LNTLKSILIINHLIGF 506
           I C TRD++ +  Y++ F+S+V +  F   L+TL+S L    L+GF
Sbjct: 215 INCSTRDLSTIEKYVEQFASSVPALLFNLELDTLRSDL---GLLGF 257


>03_02_0613 -
           9848514-9848539,9848942-9849200,9849326-9849365,
           9849952-9850117,9850228-9850756
          Length = 339

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 261 YPDANFLLYSNDLLADTIALHI*LEQPSCAHGNNAAFL 148
           YP A    YS + +AD ++ +  L Q + AHG N A+L
Sbjct: 225 YPAATTYGYSPNYVAD-LSYNAKLGQAAAAHGTNGAYL 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,323,295
Number of Sequences: 37544
Number of extensions: 285661
Number of successful extensions: 569
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)