Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6d19
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom...    30   0.32 
SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc...    27   2.3  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   3.0  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.0  
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    26   5.3  
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    25   9.2  

>SPAC1296.04 |mug65||spore wall assembly protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 17/52 (32%), Positives = 31/52 (59%)
 Frame = +2

Query: 302 LKWDEDPLIEYTIPITYKIVFKKANEQTKYTYKDDSNKFYYSCVDLLIPSAL 457
           L+ DE PL+  +  I+     ++++ QT+ +++DDS+ F  S V   IP+ L
Sbjct: 119 LRRDELPLVPESFTISSSYPIQRSSTQTRSSFEDDSSDFDLSEV-TTIPALL 169


>SPAC926.05c |||diphthamide biosynthesis protein Dph4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +2

Query: 278 KSIENFNNLKWDEDPLIEYTIPIT---YKIVFKKANEQTKYTYKDDSNKFYYSCVDL 439
           K++  F+  K  E P + YTI      Y+++  + + Q     +++ +  YYS VDL
Sbjct: 26  KALLLFHPDKCKEKPSVVYTIDQVKEAYQVLSSEKDRQQYQIKQEEESSHYYSIVDL 82


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 350 YKIVFKKANEQTKYTYKDDSNKFYYSC-VDLLIPSA 454
           +K    + NE+ K + K+DS+KF+ S    + +P++
Sbjct: 43  FKTTISQNNEEVKTSLKEDSSKFHPSASAPIFVPTS 78


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +3

Query: 393 HIRMILTNFITHASIYSFLRLYQIITKALEI*KDIKVTQ*FLTNIL*MSSIKRWEVNLQL 572
           HI +I  NF+      S L L+ I    ++   D+K     LT     SS+K+   N QL
Sbjct: 320 HIELISDNFLL-IQHDSQLSLWDITFGTIQDVYDLKQKPTILTFTCYKSSLKKMNQNSQL 378

Query: 573 KIIEMIALKK-LVITNYVM 626
                + LKK L I  Y +
Sbjct: 379 TGYIAVLLKKGLAIVPYTL 397


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = +2

Query: 392 TYKDDSNKFYYSCVD--LLIPSALSNNYEGSGDLKRHKSDTIVLDKHIVDVFYKKMGSEF 565
           TYKD  NK     V    +  S  +     S D  + K D +V        F +  G+E 
Sbjct: 433 TYKDLPNKLAKVKVSDRTIYKSTDAERRLVSPDGLQEKIDALVAKYEKGRSFVRASGTED 492

Query: 566 TIKDYRDDSTKEISDYKLC 622
            ++ Y + STK+ +D +LC
Sbjct: 493 VVRVYAEASTKQAAD-ELC 510


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 527 IVDVFYKKMGSEFTIKDYRDDSTKEISDYKLCYDKSKN 640
           IVD  YK +GS   + +  D   K ++      DK+K+
Sbjct: 124 IVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKD 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,329,715
Number of Sequences: 5004
Number of extensions: 47928
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)